Methods for sequence and structural analysis of B and T cell receptor repertoires
S Teraguchi, DS Saputri… - Computational and …, 2020 - Elsevier
B cell receptors (BCRs) and T cell receptors (TCRs) make up an essential network of
defense molecules that, collectively, can distinguish self from non-self and facilitate …
defense molecules that, collectively, can distinguish self from non-self and facilitate …
High-throughput analysis of the human thymic Vδ1+ T cell receptor repertoire
Abstract γδ T cells are a relatively rare subset of lymphocytes in the human peripheral blood,
but they play important roles at the interface between the innate and the adaptive immune …
but they play important roles at the interface between the innate and the adaptive immune …
Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes
High-throughput single-cell sequencing (scSeq) technologies are revolutionizing the ability
to molecularly profile B and T lymphocytes by offering the opportunity to simultaneously …
to molecularly profile B and T lymphocytes by offering the opportunity to simultaneously …
Comprehensive evaluation and optimization of amplicon library preparation methods for high-throughput antibody sequencing
High-throughput sequencing (HTS) of antibody repertoire libraries has become a powerful
tool in the field of systems immunology. However, numerous sources of bias in HTS …
tool in the field of systems immunology. However, numerous sources of bias in HTS …
Composition and variation analysis of the TCR β-chain CDR3 repertoire in systemic lupus erythematosus using high-throughput sequencing
W Sui, X Hou, G Zou, W Che, M Yang, C Zheng… - Molecular …, 2015 - Elsevier
The ability of T lymphocytes to mount an immune response against a diverse array of
pathogens is primarily conveyed by the amino acid (aa) sequence of the hypervariable …
pathogens is primarily conveyed by the amino acid (aa) sequence of the hypervariable …
Efficacy of a dual-epitope dendritic cell vaccine as part of combined immunotherapy for HER2-expressing breast tumors
BG Vincent, DM File, KP McKinnon… - The Journal of …, 2023 - journals.aai.org
Previous work from our group and others has shown that patients with breast cancer can
generate a T cell response against specific human epidermal growth factor 2 (HER2) …
generate a T cell response against specific human epidermal growth factor 2 (HER2) …
Antibodies from dengue patients with prior exposure to Japanese encephalitis virus are broadly neutralizing against Zika virus
GM Salem, JU Galula, SR Wu, JH Liu, YH Chen… - Communications …, 2024 - nature.com
Exposure to multiple mosquito-borne flaviviruses within a lifetime is not uncommon;
however, how sequential exposures to different flaviviruses shape the cross-reactive …
however, how sequential exposures to different flaviviruses shape the cross-reactive …
Reconstructing antibody repertoires from error-prone immunosequencing reads
A Shlemov, S Bankevich, A Bzikadze… - The Journal of …, 2017 - journals.aai.org
Transforming error-prone immunosequencing datasets into Ab repertoires is a fundamental
problem in immunogenomics, and a prerequisite for studies of immune responses. Although …
problem in immunogenomics, and a prerequisite for studies of immune responses. Although …
Antibody isotype switching as a mechanism to counter HIV neutralization escape
Neutralizing antibodies (nAbs) to highly variable viral pathogens show remarkable
diversification during infection, resulting in an" arms race" between virus and host. Studies of …
diversification during infection, resulting in an" arms race" between virus and host. Studies of …
High‐throughput DNA sequencing analysis of antibody repertoires
SD Boyd, SA Joshi - Antibodies for Infectious Diseases, 2015 - Wiley Online Library
New high‐throughput DNA sequencing (HTS) technologies developed in the past decade
have rapidly increased the scale of data collection for all aspects of human genetics (1, 2) …
have rapidly increased the scale of data collection for all aspects of human genetics (1, 2) …