Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

PP Edger, JC Pires - Chromosome Research, 2009 - Springer
Whole genome duplications (WGDs) followed by diploidization, which includes gene loss,
have been an important recurrent process in the evolution of higher eukaryotes. Gene …

Oil Accumulation by the Oleaginous Diatom Fistulifera solaris as Revealed by the Genome and Transcriptome

T Tanaka, Y Maeda, A Veluchamy, M Tanaka… - The Plant …, 2015 - academic.oup.com
Oleaginous photosynthetic organisms such as microalgae are promising sources for biofuel
production through the generation of carbon-neutral sustainable energy. However, the …

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures

MC Combes, A Dereeper, D Severac… - New …, 2013 - Wiley Online Library
Polyploidy has occurred throughout the evolutionary history of plants and led to
diversification and plant ecological adaptation. Functional plasticity of duplicate genes is …

De novo genetic variation associated with retrotransposon activation, genomic rearrangements and trait variation in a recombinant inbred line population of Brassica napus …

J Zou, D Fu, H Gong, W Qian, W Xia, JC Pires… - The Plant …, 2011 - Wiley Online Library
Interspecific hybridization is a significant evolutionary force as well as a powerful method for
crop breeding. Partial substitution of the AA subgenome in Brassica napus (AnAnCnCn) with …

Homeologous Gene Expression in Response to Growing Temperature in a Recent Allopolyploid (Coffea arabica L.)

MC Combes, A Cenci, H Baraille, B Bertrand… - Journal of …, 2012 - academic.oup.com
Allopolyploidy is considered as a major factor contributing to speciation, diversification, and
plant ecological adaptation. In particular, the expression of duplicate genes (homeologs) …

Characterization of CENH3 proteins and centromere-associated DNA sequences in diploid and allotetraploid Brassica species

G Wang, Q He, F Liu, Z Cheng, PB Talbert, W Jin - Chromosoma, 2011 - Springer
CENH3 is a centromere-specific histone H3 variant and has been used as a marker to
identify active centromeres and DNA sequences associated with functional centromere …

Structural and functional evolution of resynthesized polyploids

JC Pires, RT Gaeta - Genetics and Genomics of the Brassicaceae, 2011 - Springer
Polyploidy is widespread among the flowering plants. While many extant plant species show
evidence of polyploidy in their genomes, there is still much to be learned regarding the role it …

The shock of being united and symphiliosis: Another lesson from plants?

Y Lazebnik - Cell Cycle, 2014 - Taylor & Francis
A common view is that an accidental increase in ploidy contributes to the evolution of
neoplastic cells primarily by decreasing the fidelity of mitosis with extra chromosomes and …

Gene expression regulation and lineage evolution: the North and South tale of the hybrid polyploid Squalius alburnoides complex

I Pala, M Schartl, M Brito… - Proceedings of the …, 2010 - royalsocietypublishing.org
The evolution of hybrid polyploid vertebrates, their viability and their perpetuation over
evolutionary time have always been questions of great interest. However, little is known …

Expressed Centromere Specific Histone 3 (CENH3) Variants in Cultivated Triploid and Wild Diploid Bananas (Musa spp.)

KS Muiruri, A Britt, NO Amugune, EK Nguu… - Frontiers in plant …, 2017 - frontiersin.org
Centromeres are specified by a centromere specific histone 3 (CENH3) protein, which exists
in a complex environment, interacting with conserved proteins and rapidly evolving satellite …