Ribosomal ITS sequences and plant phylogenetic inference

I Álvarez, JF Wendel - Molecular phylogenetics and evolution, 2003 - Elsevier
One of the most popular sequences for phylogenetic inference at the generic and
infrageneric levels in plants is the internal transcribed spacer (ITS) region of the 18S–5.8 S …

Duplication and divergence: the evolution of new genes and old ideas

JS Taylor, J Raes - Annu. Rev. Genet., 2004 - annualreviews.org
▪ Abstract Over 35 years ago, Susumu Ohno stated that gene duplication was the single
most important factor in evolution. He reiterated this point a few years later in proposing that …

Advances in the study of polyploidy since Plant speciation

DE Soltis, PS Soltis, JA Tate - New phytologist, 2004 - Wiley Online Library
Enormous strides have been made in the study of polyploidy over the last 20 yr. Here, we
highlight some of these discoveries and note where our understanding of polyploid …

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

KL Adams, R Cronn, R Percifield… - Proceedings of the …, 2003 - National Acad Sciences
Most eukaryotes have genomes that exhibit high levels of gene redundancy, much of which
seems to have arisen from one or more cycles of genome doubling. Polyploidy has been …

Cellulose biosynthesis in plants: from genes to rosettes

MS Doblin, I Kurek, D Jacob-Wilk… - Plant and cell …, 2002 - academic.oup.com
Modern techniques of gene cloning have identified the CesA genes as encoding the
probable catalytic subunits of the plant CelS, the cellulose synthase enzyme complex …

Evolutionary dynamics of 3D genome architecture following polyploidization in cotton

M Wang, P Wang, M Lin, Z Ye, G Li, L Tu, C Shen, J Li… - Nature Plants, 2018 - nature.com
The formation of polyploids significantly increases the complexity of transcriptional
regulation, which is expected to be reflected in sophisticated higher-order chromatin …

Use of nuclear genes for phylogeny reconstruction in plants

RL Small, RC Cronn, JF Wendel - Australian Systematic Botany, 2004 - CSIRO Publishing
Molecular data have had a profound impact on the field of plant systematics, and the
application of DNA-sequence data to phylogenetic problems is now routine. The majority of …

Mechanisms of genomic rearrangements and gene expression changes in plant polyploids

ZJ Chen, Z Ni - Bioessays, 2006 - Wiley Online Library
Polyploidy is produced by multiplication of a single genome (autopolyploid) or combination
of two or more divergent genomes (allopolyploid). The available data obtained from the …

Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)

A Salmon, ML Ainouche, JF Wendel - Molecular ecology, 2005 - Wiley Online Library
To study the consequences of hybridization and genome duplication on polyploid genome
evolution and adaptation, we used independently formed hybrids (Spartina× townsendii and …

Utility of low-copy nuclear gene sequences in plant phylogenetics

T Sang - Critical reviews in Biochemistry and molecular biology, 2002 - Taylor & Francis
Low-copy nuclear genes in plants are a rich source of phylogenetic information. They hold a
great potential to improve the robustness of phylogenetic reconstruction at all taxonomic …