Annotation error in public databases: misannotation of molecular function in enzyme superfamilies

AM Schnoes, SD Brown, I Dodevski… - PLoS computational …, 2009 - journals.plos.org
Due to the rapid release of new data from genome sequencing projects, the majority of
protein sequences in public databases have not been experimentally characterized; rather …

DNA Sequence-Based Identification of Fusarium: A Work in Progress

K O'Donnell, BK Whitaker, I Laraba, RH Proctor… - Plant …, 2022 - Am Phytopath Society
Accurate species-level identification of an etiological agent is crucial for disease diagnosis
and management because knowing the agent's identity connects it with what is known about …

Effectiveness of ITS and sub-regions as DNA barcode markers for the identification of Basidiomycota (Fungi)

F Badotti, FS de Oliveira, CF Garcia, ABM Vaz… - BMC microbiology, 2017 - Springer
Background Fungi are among the most abundant and diverse organisms on Earth. However,
a substantial amount of the species diversity, relationships, habitats, and life strategies of …

Sequence-based classification and identification of Fungi

D Hibbett, K Abarenkov, U Kõljalg, M Öpik, B Chai… - Mycologia, 2016 - Taylor & Francis
Fungal taxonomy and ecology have been revolutionized by the application of molecular
methods and both have increasing connections to genomics and functional biology …

Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification

RH Nilsson, E Kristiansson, M Ryberg… - Evolutionary …, 2008 - journals.sagepub.com
The internal transcribed spacer (ITS) region of the nuclear ribosomal repeat unit is the most
popular locus for species identification and subgeneric phylogenetic inference in sequence …

Updating the evolutionary history of Carnivora (Mammalia): a new species-level supertree complete with divergence time estimates

K Nyakatura, ORP Bininda-Emonds - BMC biology, 2012 - Springer
Background Although it has proven to be an important foundation for investigations of
carnivoran ecology, biology and evolution, the complete species-level supertree for …

International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database—the quality controlled standard tool for routine identification of …

L Irinyi, C Serena, D Garcia-Hermoso… - Medical …, 2015 - academic.oup.com
Human and animal fungal pathogens are a growing threat worldwide leading to emerging
infections and creating new risks for established ones. There is a growing need for a rapid …

Progress towards DNA barcoding of fungi

KA Seifert - Molecular ecology resources, 2009 - Wiley Online Library
The use of DNA sequences for identifying fungi and fungus‐like organisms predates the
DNA barcoding movement by at least 10 years. A brief overview of the mycological shift from …

Current state and perspectives of fungal DNA barcoding and rapid identification procedures

D Begerow, H Nilsson, M Unterseher… - Applied microbiology and …, 2010 - Springer
Fungal research is experiencing a new wave of methodological improvements that most
probably will boost mycology as profoundly as molecular phylogeny has done during the …

DNA barcoding in Mucorales: an inventory of biodiversity

G Walther, J Pawłowska… - … and Evolution of …, 2013 - ingentaconnect.com
The order Mucorales comprises predominantly fast-growing saprotrophic fungi, some of
which are used for the fermentation of foodstuffs but it also includes species known to cause …