[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder… - Nature …, 2022 - nature.com
Zebrafish, a popular organism for studying embryonic development and for modeling human
diseases, has so far lacked a systematic functional annotation program akin to those in other …

Epigenetics in teleost fish: From molecular mechanisms to physiological phenotypes

C Best, H Ikert, DJ Kostyniuk, PM Craig… - … and Physiology Part B …, 2018 - Elsevier
While the field of epigenetics is increasingly recognized to contribute to the emergence of
phenotypes in mammalian research models across different developmental and …

[HTML][HTML] EZH2 cooperates with DNA methylation to downregulate key tumor suppressors and IFN gene signatures in melanoma

J Tiffen, SJ Gallagher, F Filipp, D Gunatilake… - Journal of Investigative …, 2020 - Elsevier
The histone methylase EZH2 is frequently dysregulated in melanoma and is associated with
DNA methylation and silencing of genes involved in tumor suppression. In this study, we …

[HTML][HTML] DNA methylation reprograms cardiac metabolic gene expression in end-stage human heart failure

ME Pepin, S Drakos, CM Ha… - American Journal …, 2019 - journals.physiology.org
Heart failure (HF) is a leading cause of morbidity and mortality in the United States and
worldwide. As a multifactorial syndrome with unpredictable clinical outcomes, identifying the …

DNA methylation and gene expression alterations in zebrafish early-life stages exposed to the antibacterial agent triclosan

E Falisse, B Ducos, PA Stockwell, IM Morison… - Environmental …, 2018 - Elsevier
There is increasing evidence that toxicant exposure can alter DNA methylation profile, one
of the main epigenetic mechanisms, particularly during embryogenesis when DNA …

Using zebrafish as a model to study the role of epigenetics in hearing loss

Y He, B Bao, H Li - Expert Opinion on Drug Discovery, 2017 - Taylor & Francis
Introduction: The rapid progress of bioinformatics and high-throughput screening techniques
in recent years has led to the identification of many candidate genes and small-molecule …

Identification of in vivo Hox13-binding sites reveals an essential locus controlling zebrafish brachyury expression

Z Ye, CR Braden, A Wills, D Kimelman - Development, 2021 - journals.biologists.com
During early embryogenesis, the vertebrate embryo extends from anterior to posterior
because of the progressive addition of cells from a posteriorly localized neuromesodermal …

[HTML][HTML] Genome-wide DNA methylation reprogramming in response to inorganic arsenic links inhibition of CTCF binding, DNMT expression and cellular …

M Rea, M Eckstein, R Eleazer, C Smith… - Scientific reports, 2017 - nature.com
Chronic low dose inorganic arsenic (iAs) exposure leads to changes in gene expression
and epithelial-to-mesenchymal transformation. During this transformation, cells adopt a …

[HTML][HTML] Reprogramming histone modification patterns to coordinate gene expression in early zebrafish embryos

W Zhu, X Xu, X Wang, J Liu - BMC genomics, 2019 - Springer
Background Multicellular organisms require precise gene regulation during ontogeny, and
epigenetic modifications, such as DNA methylation and histone modification, facilitate this …

Developmental remodelling of non-CG methylation at satellite DNA repeats

SE Ross, A Angeloni, FS Geng… - Nucleic Acids …, 2020 - academic.oup.com
In vertebrates, DNA methylation predominantly occurs at CG dinucleotides however,
widespread non-CG methylation (mCH) has been reported in mammalian embryonic stem …