Functional analysis of transcription factors in Arabidopsis

N Mitsuda, M Ohme-Takagi - Plant and Cell Physiology, 2009 - academic.oup.com
Transcription factors (TFs) regulate the expression of genes at the transcriptional level.
Modification of TF activity dynamically alters the transcriptome, which leads to metabolic and …

Metabolomic approaches toward understanding nitrogen metabolism in plants

M Kusano, A Fukushima, H Redestig… - Journal of Experimental …, 2011 - academic.oup.com
Plants can assimilate inorganic nitrogen (N) sources to organic N such as amino acids. N is
the most important of the mineral nutrients required by plants and its metabolism is tightly …

The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice

H Takasaki, K Maruyama, S Kidokoro, Y Ito… - Molecular Genetics and …, 2010 - Springer
The transcription factor OsNAC5 in rice is a member of the plant-specific NAC family that
regulates stress responses. Expression of OsNAC5 is induced by abiotic stresses such as …

Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses

N Anders, MD Wilkinson, A Lovegrove… - Proceedings of the …, 2012 - National Acad Sciences
Xylan, a hemicellulosic component of the plant cell wall, is one of the most abundant
polysaccharides in nature. In contrast to dicots, xylan in grasses is extensively modified by α …

Advances in omics and bioinformatics tools for systems analyses of plant functions

K Mochida, K Shinozaki - Plant and Cell Physiology, 2011 - academic.oup.com
Omics and bioinformatics are essential to understanding the molecular systems that underlie
various plant functions. Recent game-changing sequencing technologies have revitalized …

Systems biology-based approaches toward understanding drought tolerance in food crops

S Jogaiah, SR Govind, LSP Tran - Critical reviews in …, 2013 - Taylor & Francis
Economically important crops, such as maize, wheat, rice, barley, and other food crops are
affected by even small changes in water potential at important growth stages. Developing a …

Integrated omics approaches in plant systems biology

A Fukushima, M Kusano, H Redestig, M Arita… - Current opinion in …, 2009 - Elsevier
Understanding cellular metabolic systems is vital not only for determining the function of
enzymatic genes, but also for elucidating the coordination among various metabolic …

Genomics and bioinformatics resources for crop improvement

K Mochida, K Shinozaki - Plant and Cell Physiology, 2010 - academic.oup.com
Recent remarkable innovations in platforms for omics-based research and application
development provide crucial resources to promote research in model and applied plant …

Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice

T Asano, M Hakata, H Nakamura, N Aoki… - Plant molecular …, 2011 - Springer
Calcium acts as a messenger in various signal transduction pathways in plants. Calcium-
dependent protein kinases (CDPKs) play important roles in regulating downstream …

MOROKOSHI: Transcriptome Database in Sorghum bicolor

Y Makita, S Shimada, M Kawashima… - Plant and cell …, 2015 - academic.oup.com
In transcriptome analysis, accurate annotation of each transcriptional unit and its expression
profile is essential. A full-length cDNA (FL-cDNA) collection facilitates the refinement of …