Transcriptome programs involved in the development and structure of the cerebellum

D Farini, D Marazziti, MC Geloso, C Sette - Cellular and Molecular Life …, 2021 - Springer
In the past two decades, mounting evidence has modified the classical view of the
cerebellum as a brain region specifically involved in the modulation of motor functions …

hnRNP A1B, a Splice Variant of HNRNPA1, Is Spatially and Temporally Regulated

M Gagné, JE Deshaies, H Sidibé, Y Benchaar… - Frontiers in …, 2021 - frontiersin.org
RNA binding proteins (RBPs) play a key role in cellular growth, homoeostasis and survival
and are tightly regulated. A deep understanding of their spatiotemporal regulation is needed …

Alternative splicing regulation of an Alzheimer's risk variant in CLU

S Han, K Nho, Y Lee - International Journal of Molecular Sciences, 2020 - mdpi.com
Clusterin (CLU) is one of the risk genes most associated with late onset Alzheimer's disease
(AD), and several genetic variants in CLU are associated with AD risk. However, the …

The fine art of writing a message: RNA metabolism in the shaping and remodeling of the nervous system

M Landínez-Macías, O Urwyler - Frontiers in Molecular Neuroscience, 2021 - frontiersin.org
Neuronal morphogenesis, integration into circuits, and remodeling of synaptic connections
occur in temporally and spatially defined steps. Accordingly, the expression of proteins and …

A comprehensive atlas of fetal splicing patterns in the brain of adult myotonic dystrophy type 1 patients

MJF Degener, RTP van Cruchten… - NAR Genomics and …, 2022 - academic.oup.com
In patients with myotonic dystrophy type 1 (DM1), dysregulation of RNA-binding proteins like
MBNL and CELF1 leads to alternative splicing of exons and is thought to induce a return to …

Embryonic stem cell-derived neurons as a model system for epigenome maturation during development

S Martin, D Poppe, N Olova, C O'Leary, E Ivanova… - Genes, 2023 - mdpi.com
DNA methylation in neurons is directly linked to neuronal genome regulation and
maturation. Unlike other tissues, vertebrate neurons accumulate high levels of atypical DNA …

[HTML][HTML] Alternative splicing and gene co-expression network-based analysis of dizygotic twins with autism-spectrum disorder and their parents

K Okay, PÜ Varış, S Miral, B Ekinci, T Yaraş… - Genomics, 2021 - Elsevier
Autism spectrum disorder (ASD) is a neurodevelopmental disorder with high heritability,
however, understanding the complexity of the underlying genetic basis has proven to be a …

STW-MD: a novel spatio-temporal weighting and multi-step decision tree method for considering spatial heterogeneity in brain gene expression data

S Mao, X Huang, R Chen, C Zhang… - Briefings in …, 2024 - academic.oup.com
Gene expression during brain development or abnormal development is a biological
process that is highly dynamic in spatio and temporal. Previous studies have mainly focused …

Developmental dynamics of the postsynaptic proteome to understand synaptic maturation and dysmaturation

T Kaizuka, T Suzuki, N Kishi, MW Kilimann, T Ueyama… - BioRxiv, 2022 - biorxiv.org
The postsynaptic density (PSD) is a protein condensate composed of∼ 1,000 proteins
beneath the postsynaptic membrane of excitatory synapses. The number, shape, and …

Modulatory role of RNA helicases in MBNL-dependent alternative splicing regulation

K Taylor, A Piasecka, A Kajdasz, A Brzęk… - Cellular and Molecular …, 2023 - Springer
Muscleblind-like splicing regulators (MBNLs) activate or repress the inclusion of alternative
splicing (AS) events, enabling the developmental transition of fetal mRNA splicing isoforms …