Structural variation in the sequencing era
Identifying structural variation (SV) is essential for genome interpretation but has been
historically difficult due to limitations inherent to available genome technologies. Detection …
historically difficult due to limitations inherent to available genome technologies. Detection …
A survey of algorithms for the detection of genomic structural variants from long-read sequencing data
As long-read sequencing technologies are becoming increasingly popular, a number of
methods have been developed for the discovery and analysis of structural variants (SVs) …
methods have been developed for the discovery and analysis of structural variants (SVs) …
Sequencing and characterizing short tandem repeats in the human genome
HA Tanudisastro, IW Deveson, H Dashnow… - Nature Reviews …, 2024 - nature.com
Short tandem repeats (STRs) are highly polymorphic sequences throughout the human
genome that are composed of repeated copies of a 1–6-bp motif. Over 1 million variable …
genome that are composed of repeated copies of a 1–6-bp motif. Over 1 million variable …
The GGC repeat expansion in NOTCH2NLC is associated with oculopharyngodistal myopathy type 3
Oculopharyngodistal myopathy (OPDM) is an adult-onset neuromuscular disease
characterized by progressive ocular, facial, pharyngeal and distal limb muscle involvement …
characterized by progressive ocular, facial, pharyngeal and distal limb muscle involvement …
Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing
P Giesselmann, B Brändl, E Raimondeau… - Nature …, 2019 - nature.com
Expansions of short tandem repeats are genetic variants that have been implicated in
several neuropsychiatric and other disorders, but their assessment remains challenging with …
several neuropsychiatric and other disorders, but their assessment remains challenging with …
Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences
T Gall-Duncan, N Sato, RKC Yuen… - Genome …, 2022 - genome.cshlp.org
Expansions of gene-specific DNA tandem repeats (TRs), first described in 1991 as a
disease-causing mutation in humans, are now known to cause> 60 phenotypes, not just …
disease-causing mutation in humans, are now known to cause> 60 phenotypes, not just …
Expansion of GGC repeat in GIPC1 is associated with oculopharyngodistal myopathy
Oculopharyngodistal myopathy (OPDM) is an adult-onset inherited neuromuscular disorder
characterized by progressive ptosis, external ophthalmoplegia, and weakness of the …
characterized by progressive ptosis, external ophthalmoplegia, and weakness of the …
Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
Tandemly repeated DNA is highly mutable and causes at least 31 diseases, but it is hard to
detect pathogenic repeat expansions genome-wide. Here, we report robust detection of …
detect pathogenic repeat expansions genome-wide. Here, we report robust detection of …
Long-read sequencing identified repeat expansions in the 5′ UTR of the NOTCH2NLC gene from Chinese patients with neuronal intranuclear inclusion disease
J Deng, M Gu, Y Miao, S Yao, M Zhu, P Fang… - Journal of medical …, 2019 - jmg.bmj.com
Background Neuronal intranuclear inclusion disease (NIID) is a heterogenous
neurodegenerative disorder named after its pathological features. It has long been …
neurodegenerative disorder named after its pathological features. It has long been …
NanoVar: accurate characterization of patients' genomic structural variants using low-depth nanopore sequencing
The recent advent of third-generation sequencing technologies brings promise for better
characterization of genomic structural variants by virtue of having longer reads. However …
characterization of genomic structural variants by virtue of having longer reads. However …