Machine learning for synergistic network pharmacology: a comprehensive overview
Network pharmacology is an emerging area of systematic drug research that attempts to
understand drug actions and interactions with multiple targets. Network pharmacology has …
understand drug actions and interactions with multiple targets. Network pharmacology has …
[HTML][HTML] Differential gene expression analysis pipelines and bioinformatic tools for the identification of specific biomarkers: A review
D Rosati, M Palmieri, G Brunelli, A Morrione… - Computational and …, 2024 - Elsevier
In recent years, the role of bioinformatics and computational biology together with omics
techniques and transcriptomics has gained tremendous importance in biomedicine and …
techniques and transcriptomics has gained tremendous importance in biomedicine and …
Differential co-expression network analysis reveals key hub-high traffic genes as potential therapeutic targets for COVID-19 pandemic
Background The recent emergence of COVID-19, rapid worldwide spread, and incomplete
knowledge of molecular mechanisms underlying SARS-CoV-2 infection have limited …
knowledge of molecular mechanisms underlying SARS-CoV-2 infection have limited …
siVAE: interpretable deep generative models for single-cell transcriptomes
Neural networks such as variational autoencoders (VAE) perform dimensionality reduction
for the visualization and analysis of genomic data, but are limited in their interpretability: it is …
for the visualization and analysis of genomic data, but are limited in their interpretability: it is …
Allelic variation in transcription factor PtoWRKY68 contributes to drought tolerance in Populus
Y Fang, D Wang, L Xiao, M Quan, W Qi, F Song… - Plant …, 2023 - academic.oup.com
Drought stress limits woody species productivity and influences tree distribution. However,
dissecting the molecular mechanisms that underpin drought responses in forest trees can be …
dissecting the molecular mechanisms that underpin drought responses in forest trees can be …
Multi-task learning for the simultaneous reconstruction of the human and mouse gene regulatory networks
Abstract The reconstruction of Gene Regulatory Networks (GRNs) from gene expression
data, supported by machine learning approaches, has received increasing attention in …
data, supported by machine learning approaches, has received increasing attention in …
Transcriptomic profiling of early synucleinopathy in rats induced with preformed fibrils
JR Patterson, J Kochmanski, AC Stoll, M Kubik… - npj Parkinson's …, 2024 - nature.com
Examination of early phases of synucleinopathy when inclusions are present, but long
before neurodegeneration occurs, is critical to both understanding disease progression and …
before neurodegeneration occurs, is critical to both understanding disease progression and …
Identification of key gene targets for sensitizing colorectal cancer to chemoradiation: an integrative network analysis on multiple transcriptomics data
H Manoochehri, A Jalali, H Tanzadehpanah… - Journal of …, 2022 - Springer
Purpose Colorectal cancer (CRC) is a main cause of morbidity and mortality in the world.
Chemoradioresistance is a major problem in CRC treatment. Identification of novel …
Chemoradioresistance is a major problem in CRC treatment. Identification of novel …
Coexistent ARID1A-PIK3CA mutations are associated with immune-related pathways in luminal breast cancer
L Anabel Sinberger, T Zahavi, A Sonnenblick… - Scientific Reports, 2023 - nature.com
Up to 40% of luminal breast cancer patients carry activating mutations in the PIK3CA gene.
PIK3CA mutations commonly co-occur with other mutations, but the implication of this co …
PIK3CA mutations commonly co-occur with other mutations, but the implication of this co …
Integrative multiomics and regulatory network analyses uncovers the role of OAS3, TRAFD1, MiR-222-3p, and MiR-125b-5p in hepatitis E virus infection
The hepatitis E virus (HEV) is a long-ignored virus that has spread globally with time. It
ranked 6 th among the top risk-ranking viruses with high zoonotic spillover potential; thus …
ranked 6 th among the top risk-ranking viruses with high zoonotic spillover potential; thus …