Network analysis of microarray data

A Pavel, A Serra, L Cattelani, A Federico… - Microarray Data …, 2022 - Springer
DNA microarrays are widely used to investigate gene expression. Even though the classical
analysis of microarray data is based on the study of differentially expressed genes, it is well …

[HTML][HTML] Multi-omics analysis predicts fibronectin 1 as a prognostic biomarker in glioblastoma multiforme

F Kabir, MNH Apu - Genomics, 2022 - Elsevier
Glioblastoma (GBM) is one of the most malignant and intractable central nervous system
tumors with high recurrence, low survival rate, and poor prognosis. Despite the advances of …

[HTML][HTML] Machine learning approaches for diagnosing depression using EEG: A review

Y Liu, C Pu, S Xia, D Deng, X Wang… - Translational Neuroscience, 2022 - degruyter.com
Depression has become one of the most crucial public health issues, threatening the quality
of life of over 300 million people throughout the world. Nevertheless, the clinical diagnosis of …

[HTML][HTML] Weighted gene coexpression network analysis reveals essential genes and pathways in bipolar disorder

ZQ Zhang, WW Wu, JD Chen, GY Zhang, JY Lin… - Frontiers in …, 2021 - frontiersin.org
Bipolar disorder (BD) is a major and highly heritable mental illness with severe psychosocial
impairment, but its etiology and pathogenesis remains unclear. This study aimed to identify …

[HTML][HTML] Perkinsus marinus suppresses in vitro eastern oyster apoptosis via IAP-dependent and caspase-independent pathways involving TNFR, NF-kB, and oxidative …

EM Witkop, GH Wikfors, DA Proestou… - Developmental & …, 2022 - Elsevier
The protozoan parasite Perkinsus marinus causes Dermo disease in eastern oysters,
Crassostrea virginica, and can suppress apoptosis of infected hemocytes using incompletely …

[HTML][HTML] Bioinformatics and systems-biology analysis to determine the effects of Coronavirus disease 2019 on patients with allergic asthma

H Fang, Z Sun, Z Chen, A Chen, D Sun… - Frontiers in …, 2022 - frontiersin.org
Background The coronavirus disease (COVID-19) pandemic has posed a significant
challenge for global health systems. Increasing evidence shows that asthma phenotypes …

[HTML][HTML] Identification of metabolic pathways differentially regulated in somatic and zygotic embryos of maritime pine

C Ávila, MT Llebrés, V Castro-Rodríguez… - Frontiers in Plant …, 2022 - frontiersin.org
Embryogenesis is a complex phase of conifer development involving hundreds of genes,
and a proper understanding of this process is critical not only to produce embryos with …

[HTML][HTML] Data-driven structural analysis of small cell lung cancer transcription factor network suggests potential subtype regulators and transition pathways

M Ozen, CF Lopez - npj Systems Biology and Applications, 2023 - nature.com
Small cell lung cancer (SCLC) is an aggressive disease and challenging to treat due to its
mixture of transcriptional subtypes and subtype transitions. Transcription factor (TF) …

Comparative transcriptome profiling of near isogenic lines PBW343 and FLW29 to unravel defense related genes and pathways contributing to stripe rust resistance in …

ZA Mir, D Chauhan, AK Pradhan, V Srivastava… - Functional & Integrative …, 2023 - Springer
Stripe rust (Sr), caused by Puccinia striiformis f. sp. tritici (Pst), is the most devastating
disease that poses serious threat to the wheat-growing nations across the globe …

[HTML][HTML] Integrative analysis of the methylome and transcriptome of tomato fruit (Solanum lycopersicum L.) induced by postharvest handling

J Zhou, S Zhou, B Chen, K Sangsoy… - Horticulture …, 2024 - academic.oup.com
Tomato fruit ripening is triggered by the demethylation of key genes, which alters their
transcriptional levels thereby initiating and propagating a cascade of physiological events …