De novo genome assembly of the medicinal plant Gentiana macrophylla provides insights into the genomic evolution and biosynthesis of iridoids

T Zhou, G Bai, Y Hu, M Ruhsam, Y Yang… - DNA Research, 2022 - academic.oup.com
Gentiana macrophylla is a perennial herb in the Gentianaceae family, whose dried roots are
used in traditional Chinese medicine. Here, we assembled a chromosome-level genome of …

[HTML][HTML] Population genomics reveal deep divergence and strong geographical structure in gentians in the Hengduan Mountains

PC Fu, SS Sun, PM Hollingsworth, SL Chen… - Frontiers in plant …, 2022 - frontiersin.org
Understanding the evolutionary and ecological processes driving population differentiation
and speciation can provide critical insights into the formation of biodiversity. Here, we …

[HTML][HTML] Plastome-based phylogeny and biogeography of Lactuca L. (Asteraceae) support revised lettuce gene pool categories

R Chu, X Xu, Z Lu, Y Ma, H Cheng, S Zhu… - Frontiers in Plant …, 2022 - frontiersin.org
This study generated and analyzed complete plastome and internal transcribed spacer (ITS)
data of 46 Lactuca species, 13 African endemic (AE) Lactuca species, and 15 species from …

[HTML][HTML] Incongruences between nuclear and plastid phylogenies challenge the identification of correlates of diversification in Gentiana in the European Alpine …

A Favre, J Paule, J Ebersbach - Alpine Botany, 2022 - Springer
Mountains are reservoirs for a tremendous biodiversity which was fostered by a suite of
factors acting in concert throughout evolutionary times. These factors can be climatic …

Strong plastid degradation is consistent within section Chondrophyllae, the most speciose lineage of Gentiana

PC Fu, SL Chen, SS Sun, A Favre - Ecology and Evolution, 2022 - Wiley Online Library
Recovering phylogenetic relationships in lineages experiencing intense diversification has
always been a persistent challenge in evolutionary studies, including in Gentiana section …

[HTML][HTML] Plastid and mitochondrial phylogenomics reveal correlated substitution rate variation in Koenigia (Polygonoideae, Polygonaceae) and a reduced plastome for …

XJ Qu, XJ Zhang, DL Cao, XX Guo, JP Mower… - Molecular Phylogenetics …, 2022 - Elsevier
Koenigia, a genus proposed by Linnaeus, has a contentious taxonomic history. In particular,
relationships among species and the circumscription of the genus relative to Aconogonon …

[HTML][HTML] Cryptic diversity and rampant hybridization in annual gentians on the Qinghai-Tibet Plateau revealed by population genomic analysis

PC Fu, QQ Guo, D Chang, QB Gao, SS Sun - Plant Diversity, 2024 - Elsevier
Understanding the evolutionary and ecological processes involved in population
differentiation and speciation provides critical insights into biodiversity formation. In this …

[HTML][HTML] Complete Chloroplast Genome Sequences of Two Ehretia Trees (Ehretia cymosa and Ehretia obtusifolia): Genome Structures and Phylogenetic Analysis

MS Alawfi, DA Alzahrani, EJ Albokhari - Forests, 2023 - mdpi.com
Ehretiaceae is a family in the order Boraginales. It contains more than 150 species. The
Ehretiaceae classification has remained elusive and changed over time from subfamily to …

[HTML][HTML] Between allopatry and secondary contact: differentiation and hybridization among three sympatric Gentiana species in the Qinghai-Tibet Plateau

P Fu, A Favre, R Wang, Y Huang, S Sun - BMC Plant Biology, 2022 - Springer
Background Mountains of the world host a significant portion of all terrestrial biodiversity,
and the region of the Qinghai-Tibet Plateau (QTP) stands as one of the most remarkable …

Hybridization and divergent climatic preferences drive divergence of two allopatric Gentiana species on the Qinghai–Tibet Plateau

PC Fu, AD Twyford, YT Hao, Y Zhang, SL Chen… - Annals of …, 2023 - academic.oup.com
Abstract Background and Aims Exploring how species diverge is vital for understanding the
drivers of speciation. Factors such as geographical separation and ecological selection …