Towards population-scale long-read sequencing
W De Coster, MH Weissensteiner… - Nature Reviews …, 2021 - nature.com
Long-read sequencing technologies have now reached a level of accuracy and yield that
allows their application to variant detection at a scale of tens to thousands of samples …
allows their application to variant detection at a scale of tens to thousands of samples …
Current status of structural variation studies in plants
Structural variations (SVs) including gene presence/absence variations and copy number
variations are a common feature of genomes in plants and, together with single nucleotide …
variations are a common feature of genomes in plants and, together with single nucleotide …
Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions
Third-generation long-read sequencing is transforming plant genomics. Oxford Nanopore
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Technologies and Pacific Biosciences are offering competing long-read sequencing …
Low-input high-molecular-weight DNA extraction for long-read sequencing from plants of diverse families
Long-read DNA sequencing technologies require high molecular weight (HMW) DNA of
adequate purity and integrity, which can be difficult to isolate from plant material. Plant …
adequate purity and integrity, which can be difficult to isolate from plant material. Plant …
Exploring the gene pool of Brassica napus by genomics‐based approaches
D Hu, J Jing, RJ Snowdon, AS Mason… - Plant Biotechnology …, 2021 - Wiley Online Library
De novo allopolyploidization in Brassica provides a very successful model for reconstructing
polyploid genomes using progenitor species and relatives to broaden crop gene pools and …
polyploid genomes using progenitor species and relatives to broaden crop gene pools and …
Overcoming genetic paucity of Camelina sativa: possibilities for interspecific hybridization conditioned by the genus evolution pathway
Camelina or false flax (Camelina sativa) is an emerging oilseed crop and a feedstock for
biofuel production. This species is believed to originate from Western Asian and Eastern …
biofuel production. This species is believed to originate from Western Asian and Eastern …
Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology
MA Lemay, JA Sibbesen, D Torkamaneh, J Hamel… - BMC biology, 2022 - Springer
Abstract Background Structural variants (SVs), including deletions, insertions, duplications,
and inversions, are relatively long genomic variations implicated in a diverse range of …
and inversions, are relatively long genomic variations implicated in a diverse range of …
Local Duplication of TIR-NBS-LRR Gene Marks Clubroot Resistance in Brassica napus cv. Tosca
PM Kopec, K Mikolajczyk, E Jajor, A Perek… - Frontiers in Plant …, 2021 - frontiersin.org
Clubroot, caused by Plasmodiophora brassicae infection, is a disease of growing
importance in cruciferous crops, including oilseed rape (Brassica napus). The affected …
importance in cruciferous crops, including oilseed rape (Brassica napus). The affected …
A novel deletion in FLOWERING LOCUS T modulates flowering time in winter oilseed rape
Key message A novel structural variant was discovered in the FLOWERING LOCUS T
orthologue BnaFT. A02 by long-read sequencing. Nested association mapping in an elite …
orthologue BnaFT. A02 by long-read sequencing. Nested association mapping in an elite …
Accurate prediction of quantitative traits with failed SNP calls in canola and maize
In modern plant breeding, genomic selection is becoming the gold standard to select
superior genotypes in large breeding populations that are only partially phenotyped. Many …
superior genotypes in large breeding populations that are only partially phenotyped. Many …