Navigating the pitfalls of applying machine learning in genomics

S Whalen, J Schreiber, WS Noble… - Nature Reviews Genetics, 2022 - nature.com
The scale of genetic, epigenomic, transcriptomic, cheminformatic and proteomic data
available today, coupled with easy-to-use machine learning (ML) toolkits, has propelled the …

Deep learning for tomographic image reconstruction

G Wang, JC Ye, B De Man - Nature machine intelligence, 2020 - nature.com
Deep-learning-based tomographic imaging is an important application of artificial
intelligence and a new frontier of machine learning. Deep learning has been widely used in …

Democratising deep learning for microscopy with ZeroCostDL4Mic

L von Chamier, RF Laine, J Jukkala, C Spahn… - Nature …, 2021 - nature.com
Deep Learning (DL) methods are powerful analytical tools for microscopy and can
outperform conventional image processing pipelines. Despite the enthusiasm and …

Robust compressed sensing mri with deep generative priors

A Jalal, M Arvinte, G Daras, E Price… - Advances in …, 2021 - proceedings.neurips.cc
Abstract The CSGM framework (Bora-Jalal-Price-Dimakis' 17) has shown that
deepgenerative priors can be powerful tools for solving inverse problems. However, to date …

Deep learning techniques for inverse problems in imaging

G Ongie, A Jalal, CA Metzler… - IEEE Journal on …, 2020 - ieeexplore.ieee.org
Recent work in machine learning shows that deep neural networks can be used to solve a
wide variety of inverse problems arising in computational imaging. We explore the central …

Implicit neural representation in medical imaging: A comparative survey

A Molaei, A Aminimehr, A Tavakoli… - Proceedings of the …, 2023 - openaccess.thecvf.com
Implicit neural representations (INRs) have emerged as a powerful paradigm in scene
reconstruction and computer graphics, showcasing remarkable results. By utilizing neural …

Advances in data preprocessing for biomedical data fusion: An overview of the methods, challenges, and prospects

S Wang, ME Celebi, YD Zhang, X Yu, S Lu, X Yao… - Information …, 2021 - Elsevier
Due to the proliferation of biomedical imaging modalities, such as Photoacoustic
Tomography, Computed Tomography (CT), Optical Microscopy and Tomography, etc …

Solving inverse problems in medical imaging with score-based generative models

Y Song, L Shen, L Xing, S Ermon - arXiv preprint arXiv:2111.08005, 2021 - arxiv.org
Reconstructing medical images from partial measurements is an important inverse problem
in Computed Tomography (CT) and Magnetic Resonance Imaging (MRI). Existing solutions …

DRONE: Dual-domain residual-based optimization network for sparse-view CT reconstruction

W Wu, D Hu, C Niu, H Yu… - … on Medical Imaging, 2021 - ieeexplore.ieee.org
Deep learning has attracted rapidly increasing attention in the field of tomographic image
reconstruction, especially for CT, MRI, PET/SPECT, ultrasound and optical imaging. Among …

Deep equilibrium architectures for inverse problems in imaging

D Gilton, G Ongie, R Willett - IEEE Transactions on …, 2021 - ieeexplore.ieee.org
Recent efforts on solving inverse problems in imaging via deep neural networks use
architectures inspired by a fixed number of iterations of an optimization method. The number …