Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR–Cas9 barcodes by scGESTALT

B Raj, JA Gagnon, AF Schier - Nature protocols, 2018 - nature.com
Lineage relationships among the large number of heterogeneous cell types generated
during development are difficult to reconstruct in a high-throughput manner. We recently …

Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?

I Salvador-Martínez, M Grillo, M Averof, MJ Telford - Elife, 2019 - elifesciences.org
Cell lineages provide the framework for understanding how cell fates are decided during
development. Describing cell lineages in most organisms is challenging; even a fruit fly larva …

Application of CRISPR-Cas9 based genome-wide screening approaches to study cellular signalling mechanisms

S Sharma, E Petsalaki - International journal of molecular sciences, 2018 - mdpi.com
The cellular signalling process is a highly complex mechanism, involving multiple players,
which together orchestrate the cell's response to environmental changes and perturbations …

New tools for lineage tracing in cancer in vivo

MG Jones, D Yang, JS Weissman - Annual Review of Cancer …, 2023 - annualreviews.org
During tumor evolution, cancer cells can acquire the ability to proliferate, invade neighboring
tissues, evade the immune system, and spread systemically. Tracking this process remains …

Exploring single cells in space and time during tissue development, homeostasis and regeneration

U Mayr, D Serra, P Liberali - Development, 2019 - journals.biologists.com
Complex 3D tissues arise during development following tightly organized events in space
and time. In particular, gene regulatory networks and local interactions between single cells …

[HTML][HTML] Recording of elapsed time and temporal information about biological events using Cas9

J Park, JM Lim, I Jung, SJ Heo, J Park, Y Chang… - Cell, 2021 - cell.com
DNA has not been utilized to record temporal information, although DNA has been used to
record biological information and to compute mathematical problems. Here, we found that …

The dynamics of adaptive genetic diversity during the early stages of clonal evolution

JR Blundell, K Schwartz, D Francois… - Nature ecology & …, 2019 - nature.com
The dynamics of genetic diversity in large clonally evolving cell populations are poorly
understood, despite having implications for the treatment of cancer and microbial infections …

Cellular barcoding tracks heterogeneous clones through selective pressures and phenotypic transitions

KK Howland, A Brock - Trends in Cancer, 2023 - cell.com
Genomic DNA barcoding has emerged as a sensitive and flexible tool to measure the fates
of clonal subpopulations within a heterogeneous cancer cell population. Coupling cellular …

Synthetic gene circuits as tools for drug discovery

AM Beitz, CG Oakes, KE Galloway - Trends in Biotechnology, 2022 - cell.com
Within mammalian systems, there exists enormous opportunity to use synthetic gene circuits
to enhance phenotype-based drug discovery, to map the molecular origins of disease, and …

Startle: a star homoplasy approach for crispr-cas9 lineage tracing

P Sashittal, H Schmidt, M Chan, BJ Raphael - Cell Systems, 2023 - cell.com
CRISPR-Cas9-based genome editing combined with single-cell sequencing enables the
tracing of the history of cell divisions, or cellular lineage, in tissues and whole organisms …