Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR–Cas9 barcodes by scGESTALT
Lineage relationships among the large number of heterogeneous cell types generated
during development are difficult to reconstruct in a high-throughput manner. We recently …
during development are difficult to reconstruct in a high-throughput manner. We recently …
Is it possible to reconstruct an accurate cell lineage using CRISPR recorders?
Cell lineages provide the framework for understanding how cell fates are decided during
development. Describing cell lineages in most organisms is challenging; even a fruit fly larva …
development. Describing cell lineages in most organisms is challenging; even a fruit fly larva …
Application of CRISPR-Cas9 based genome-wide screening approaches to study cellular signalling mechanisms
S Sharma, E Petsalaki - International journal of molecular sciences, 2018 - mdpi.com
The cellular signalling process is a highly complex mechanism, involving multiple players,
which together orchestrate the cell's response to environmental changes and perturbations …
which together orchestrate the cell's response to environmental changes and perturbations …
New tools for lineage tracing in cancer in vivo
During tumor evolution, cancer cells can acquire the ability to proliferate, invade neighboring
tissues, evade the immune system, and spread systemically. Tracking this process remains …
tissues, evade the immune system, and spread systemically. Tracking this process remains …
Exploring single cells in space and time during tissue development, homeostasis and regeneration
U Mayr, D Serra, P Liberali - Development, 2019 - journals.biologists.com
Complex 3D tissues arise during development following tightly organized events in space
and time. In particular, gene regulatory networks and local interactions between single cells …
and time. In particular, gene regulatory networks and local interactions between single cells …
[HTML][HTML] Recording of elapsed time and temporal information about biological events using Cas9
DNA has not been utilized to record temporal information, although DNA has been used to
record biological information and to compute mathematical problems. Here, we found that …
record biological information and to compute mathematical problems. Here, we found that …
The dynamics of adaptive genetic diversity during the early stages of clonal evolution
JR Blundell, K Schwartz, D Francois… - Nature ecology & …, 2019 - nature.com
The dynamics of genetic diversity in large clonally evolving cell populations are poorly
understood, despite having implications for the treatment of cancer and microbial infections …
understood, despite having implications for the treatment of cancer and microbial infections …
Cellular barcoding tracks heterogeneous clones through selective pressures and phenotypic transitions
KK Howland, A Brock - Trends in Cancer, 2023 - cell.com
Genomic DNA barcoding has emerged as a sensitive and flexible tool to measure the fates
of clonal subpopulations within a heterogeneous cancer cell population. Coupling cellular …
of clonal subpopulations within a heterogeneous cancer cell population. Coupling cellular …
Synthetic gene circuits as tools for drug discovery
AM Beitz, CG Oakes, KE Galloway - Trends in Biotechnology, 2022 - cell.com
Within mammalian systems, there exists enormous opportunity to use synthetic gene circuits
to enhance phenotype-based drug discovery, to map the molecular origins of disease, and …
to enhance phenotype-based drug discovery, to map the molecular origins of disease, and …
Startle: a star homoplasy approach for crispr-cas9 lineage tracing
CRISPR-Cas9-based genome editing combined with single-cell sequencing enables the
tracing of the history of cell divisions, or cellular lineage, in tissues and whole organisms …
tracing of the history of cell divisions, or cellular lineage, in tissues and whole organisms …