Riboswitches and translation control

RR Breaker - Cold Spring Harbor perspectives in biology, 2018 - cshperspectives.cshlp.org
A growing collection of bacterial riboswitch classes is being discovered that sense central
metabolites, coenzymes, and signaling molecules. Included among the various mechanisms …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

Bacteria require phase separation for fitness in the mammalian gut

E Krypotou, GE Townsend, X Gao, S Tachiyama, J Liu… - Science, 2023 - science.org
Therapeutic manipulation of the gut microbiota holds great potential for human health. The
mechanisms bacteria use to colonize the gut therefore present valuable targets for clinical …

Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping

PP Adams, G Baniulyte, C Esnault, K Chegireddy… - Elife, 2021 - elifesciences.org
Many bacterial genes are regulated by RNA elements in their 5´ untranslated regions
(UTRs). However, the full complement of these elements is not known even in the model …

Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus

Y Murayama, H Ehara, M Aoki, M Goto, T Yokoyama… - Science …, 2023 - science.org
Transcription termination is an essential step in transcription by RNA polymerase (RNAP)
and crucial for gene regulation. For many bacterial genes, transcription termination is …

Co-transcriptional gene regulation in eukaryotes and prokaryotes

M Shine, J Gordon, L Schärfen, D Zigackova… - … Reviews Molecular Cell …, 2024 - nature.com
Many steps of RNA processing occur during transcription by RNA polymerases. Co-
transcriptional activities are deemed commonplace in prokaryotes, in which the lack of …

Rho protein: roles and mechanisms

P Mitra, G Ghosh, M Hafeezunnisa… - Annual review of …, 2017 - annualreviews.org
At the end of the multistep transcription process, the elongating RNA polymerase (RNAP) is
dislodged from the DNA template either at specific DNA sequences, called the terminators …

Regulation of bacterial gene expression by transcription attenuation

CL Turnbough Jr - Microbiology and Molecular Biology Reviews, 2019 - Am Soc Microbiol
SUMMARY A wide variety of mechanisms that control gene expression in bacteria are
based on conditional transcription termination. Generally, in these mechanisms, a …

A widely conserved protein Rof inhibits transcription termination factor Rho and promotes Salmonella virulence program

J Zhang, S Zhang, W Zhou, X Zhang, G Li, R Li… - Nature …, 2024 - nature.com
Transcription is crucial for the expression of genetic information and its efficient and accurate
termination is required for all living organisms. Rho-dependent termination could rapidly …

Cellular Adaptations to Cytoplasmic Mg2+ Limitation

EA Groisman, C Chan - Annual review of microbiology, 2021 - annualreviews.org
Mg2+ is the most abundant divalent cation in living cells. It is essential for charge
neutralization, macromolecule stabilization, and the assembly and activity of ribosomes and …