Integrating ChIP-seq with other functional genomics data
S Jiang, A Mortazavi - Briefings in functional genomics, 2018 - academic.oup.com
Transcription is regulated by transcription factor (TF) binding at promoters and distal
regulatory elements and histone modifications that control the accessibility of these …
regulatory elements and histone modifications that control the accessibility of these …
[HTML][HTML] Cell cycle dynamics and developmental dynamics of the 3D genome: toward linking the two timescales
H Miura, I Hiratani - Current Opinion in Genetics & Development, 2022 - Elsevier
In the mammalian cell nucleus, chromosomes are folded differently in interphase and
mitosis. Interphase chromosomes are relatively decondensed and display at least two …
mitosis. Interphase chromosomes are relatively decondensed and display at least two …
[HTML][HTML] Reconstruct high-resolution 3D genome structures for diverse cell-types using FLAMINGO
High-resolution reconstruction of spatial chromosome organizations from chromatin contact
maps is highly demanded, but is hindered by extensive pairwise constraints, substantial …
maps is highly demanded, but is hindered by extensive pairwise constraints, substantial …
[HTML][HTML] Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity
Background Network analysis is a powerful way of modeling chromatin interactions.
Assortativity is a network property used in social sciences to identify factors affecting how …
Assortativity is a network property used in social sciences to identify factors affecting how …
[图书][B] Epigenetic processes and evolution of life
J Švorcová, A Markoš - 2019 - taylorfrancis.com
The book covers the possible story of emergence of life and its subsequent evolution,
emphasizing the necessary evolutionary step negotiation of a common" language set" which …
emphasizing the necessary evolutionary step negotiation of a common" language set" which …
[HTML][HTML] Genomics and epigenetics of sexual commitment in Plasmodium
DP Bechtsi, AP Waters - International Journal for Parasitology, 2017 - Elsevier
Malaria is the disease caused by the apicomplexan parasites belonging to the genus
Plasmodium. Expanding our arsenal to include transmission-blocking agents in our fight …
Plasmodium. Expanding our arsenal to include transmission-blocking agents in our fight …
[HTML][HTML] Genetic correlations reveal the shared genetic architecture of transcription in human peripheral blood
SW Lukowski, LR Lloyd-Jones, A Holloway… - Nature …, 2017 - nature.com
Transcript co-expression is regulated by a combination of shared genetic and environmental
factors. Here, we estimate the proportion of co-expression that is due to shared genetic …
factors. Here, we estimate the proportion of co-expression that is due to shared genetic …
ChromStruct 4: A Python Code to Estimate the Chromatin Structure from Hi-C Data
A method and a stand-alone Python code to estimate the 3D chromatin structure from
chromosome conformation capture data are presented. The method is based on a …
chromosome conformation capture data are presented. The method is based on a …
Chromosome conformation capture-based DNA hybridization method for chromosomal translocation screening
Background: DNA probes have been widely used as diagnostic tools for translocations. This
study sought to design a screening tool using ssDNA probes and chromosome conformation …
study sought to design a screening tool using ssDNA probes and chromosome conformation …
Estimation of the spatial chromatin structure based on a multiresolution bead-chain model
We present a method to infer 3D chromatin configurations from Chromosome Conformation
Capture data. Quite a few methods have been proposed to estimate the structure of the …
Capture data. Quite a few methods have been proposed to estimate the structure of the …