Cytonuclear evolution of rubisco in four allopolyploid lineages

L Gong, M Olson, JF Wendel - Molecular Biology and Evolution, 2014 - academic.oup.com
Allopolyploidization in plants entails the merger of two divergent nuclear genomes, typically
with only one set (usually maternal) of parental plastidial and mitochondrial genomes and …

Homoeologous gene expression and co-expression network analyses and evolutionary inference in allopolyploids

G Hu, CE Grover, MA Arick, M Liu… - Briefings in …, 2021 - academic.oup.com
Polyploidy is a widespread phenomenon throughout eukaryotes. Due to the coexistence of
duplicated genomes, polyploids offer unique challenges for estimating gene expression …

Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee

P Lashermes, MC Combes, Y Hueber… - The Plant …, 2014 - Wiley Online Library
Allopolyploidization is widespread and has played a major role in flowering plant
diversification. Genomic changes are common consequences of allopolyploidization, but …

A transcriptome profile for developing seed of polyploid cotton

R Hovav, A Faigenboim‐Doron, N Kadmon… - The Plant …, 2015 - Wiley Online Library
Cotton ranks among the world's important oilseed crops, yet relative to other oilseeds there
are few studies of oil‐related biosynthetic and regulatory pathways. We present global …

Phenomics and transcriptomics analyses reveal deposition of suberin and lignin in the short fiber cell walls produced from a wild cotton species and two mutants

HJ Kim, Y Liu, GN Thyssen, M Naoumkina… - Plos one, 2023 - journals.plos.org
Fiber length is one of the major properties determining the quality and commercial value of
cotton. To understand the mechanisms regulating fiber length, genetic variations of cotton …

An interspecific fungal hybrid reveals cross-kingdom rules for allopolyploid gene expression patterns

MP Cox, T Dong, GG Shen, Y Dalvi, DB Scott… - PLoS …, 2014 - journals.plos.org
Polyploidy, a state in which the chromosome complement has undergone an increase, is a
major force in evolution. Understanding the consequences of polyploidy has received much …

Subgenome evolution in allotetraploid plants

M Schiavinato, A Bodrug‐Schepers, JC Dohm… - The Plant …, 2021 - Wiley Online Library
Polyploidization is a well‐known speciation and adaptation mechanism. Traces of former
polyploidization events were discovered within many genomes, and especially in plants …

Molecular mapping of restriction-site associated DNA markers in allotetraploid upland cotton

Y Wang, Z Ning, Y Hu, J Chen, R Zhao, H Chen, N Ai… - PLoS …, 2015 - journals.plos.org
Upland cotton (Gossypium hirsutum L., 2n= 52, AADD) is an allotetraploid, therefore the
discovery of single nucleotide polymorphism (SNP) markers is difficult. The recent …

Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq

C Shen, X Jin, D Zhu, Z Lin - BMC genomics, 2017 - Springer
Abstract Background Cotton (Gossypium spp.), as the world's most utilized textile fibre
source, is an important, economically valuable crop worldwide. Understanding the genomic …

[HTML][HTML] Cercis: a non-polyploid genomic relic within the generally polyploid legume family

JS Stai, A Yadav, C Sinou, A Bruneau… - Frontiers in Plant …, 2019 - frontiersin.org
Based on evolutionary, phylogenomic, and synteny analyses of genome sequences for
more than a dozen diverse legume species as well as analysis of chromosome counts …