Gene-expression novelty in allopolyploid cotton: a proteomic perspective

G Hu, J Koh, MJ Yoo, S Chen, JF Wendel - Genetics, 2015 - academic.oup.com
Allopolyploidization is accompanied by changes in gene expression that are thought to
contribute to phenotypic diversification. Here we describe global changes in the single …

[HTML][HTML] Genomic Identification and Comparative Expansion Analysis of the Non-Specific Lipid Transfer Protein Gene Family in Gossypium

F Li, K Fan, F Ma, E Yue, N Bibi, M Wang, H Shen… - Scientific Reports, 2016 - nature.com
Plant non-specific lipid transfer proteins (nsLTPs) are involved in many biological processes.
In this study, 51, 47 and 91 nsLTPs were identified in Gossypium arboreum, G. raimondii …

[HTML][HTML] DNA sequence evolution and rare homoeologous conversion in tetraploid cotton

JT Page, ZS Liechty, RH Alexander, K Clemons… - PLoS …, 2016 - journals.plos.org
Allotetraploid cotton species are a vital source of spinnable fiber for textiles. The polyploid
nature of the cotton genome raises many evolutionary questions as to the relationships …

[HTML][HTML] Patterns of chromosomal variation in natural populations of the neoallotetraploid Tragopogon mirus (Asteraceae)

M Chester, RK Riley, PS Soltis, DE Soltis - Heredity, 2015 - nature.com
Cytological studies have shown many newly formed allopolyploids (neoallopolyploids)
exhibit chromosomal variation as a result of meiotic irregularities, but few naturally occurring …

Comparative genomics of an unusual biogeographic disjunction in the cotton tribe (Gossypieae) yields insights into genome downsizing

CE Grover, MA Arick, JL Conover… - Genome Biology and …, 2017 - academic.oup.com
Long-distance insular dispersal is associated with divergence and speciation because of
founder effects and strong genetic drift. The cotton tribe (Gossypieae) has experienced …

[HTML][HTML] Genome-wide characterization and expression analysis of geranylgeranyl diphosphate synthase genes in cotton (Gossypium spp.) in plant development and …

F Ali, G Qanmber, Z Wei, D Yu, Y Li, L Gan, F Li… - BMC genomics, 2020 - Springer
Background GGPP (geranylgeranyl diphosphate) is produced in the isoprenoid pathway
and mediates the function of various plant metabolites, which is synthesized by GGPPS …

Insights into the ecology and evolution of polyploid plants through network analysis

JP Gallagher, CE Grover, G Hu, JF Wendel - Molecular ecology, 2016 - Wiley Online Library
Polyploidy is a widespread phenomenon throughout eukaryotes, with important ecological
and evolutionary consequences. Although genes operate as components of complex …

Gene expression profiling reveals transcription factor networks and subgenome bias during Brassica napus seed development

D Khan, DJ Ziegler, JL Kalichuk, V Hoi… - The Plant …, 2022 - Wiley Online Library
We profiled the global gene expression landscape across the reproductive lifecycle of
Brassica napus. Comparative analysis of this nascent amphidiploid revealed the …

Composition and Expression of Conserved MicroRNA Genes in Diploid Cotton (Gossypium) Species

L Gong, A Kakrana, S Arikit, BC Meyers… - Genome Biology and …, 2013 - academic.oup.com
MicroRNAs are ubiquitous in plant genomes but vary greatly in their abundance within and
conservation among plant lineages. To gain insight into the evolutionary birth/death …

Targeted capture of homoeologous coding and noncoding sequence in polyploid cotton

A Salmon, JA Udall, JA Jeddeloh… - G3: Genes| Genomes …, 2012 - academic.oup.com
Targeted sequence capture is a promising technology in many areas in biology. These
methods enable efficient and relatively inexpensive sequencing of hundreds to thousands of …