Fine mapping and gene cloning in the post-NGS era: advances and prospects

D Jaganathan, A Bohra, M Thudi… - Theoretical and Applied …, 2020 - Springer
Improvement in traits of agronomic importance is the top breeding priority of crop
improvement programs. Majority of these agronomic traits show complex quantitative …

Deployment of wild relatives for genetic improvement in rice (Oryza sativa)

KB Gaikwad, N Singh, P Kaur, S Rani, P Babu H… - Plant …, 2021 - Wiley Online Library
Rice is one of the most important crops in the world. The wild species of rice are expected to
have novel beneficial alleles that have been lost from cultivated rice during the process of …

Wild relatives of rice: a valuable genetic resource for genomics and breeding research

DS Brar, GS Khush - The wild Oryza genomes, 2018 - Springer
Abstract Worldwide, more than 3.5 billion people depend on rice for more than 20% of their
daily calories. Global rice demand is estimated to rise from 723 million tons in 2015 to 763 …

Genotyping-by-sequencing based QTL mapping for rice grain yield under reproductive stage drought stress tolerance

S Yadav, N Sandhu, VK Singh, M Catolos, A Kumar - Scientific reports, 2019 - nature.com
QTLs for rice grain yield under reproductive stage drought stress (qDTY) identified earlier
with low density markers have shown linkage drag and need to be fine mapped before their …

Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice

B Khahani, E Tavakol, V Shariati, F Fornara - BMC genomics, 2020 - Springer
Background Improving yield and yield-related traits is the crucial goal in breeding
programmes of cereals. Meta-QTL (MQTL) analysis discovers the most stable QTLs …

Identification of promising RILs for high grain zinc through genotype× environment analysis and stable grain zinc QTL using SSRs and SNPs in rice (Oryza sativa L.)

K Suman, CN Neeraja, P Madhubabu… - Frontiers in plant …, 2021 - frontiersin.org
Polished rice is one of the commonly consumed staple foods across the world. However, it
contains limited nutrients especially iron (Fe) and zinc (Zn). To identify promising …

Optimal sequencing depth design for whole genome re-sequencing in pigs

Y Jiang, Y Jiang, S Wang, Q Zhang, X Ding - Bmc Bioinformatics, 2019 - Springer
Background As whole-genome sequencing is becoming a routine technique, it is important
to identify a cost-effective depth of sequencing for such studies. However, the relationship …

[HTML][HTML] GL9 from Oryza glumaepatula controls grain size and chalkiness in rice

S Lin, Z Liu, K Zhang, W Yang, P Zhan, Q Tan, Y Gou… - The Crop Journal, 2023 - Elsevier
Grain size is a key factor influencing grain yield and appearance quality in rice. We identified
twelve quantitative trait loci (QTL) for grain length (GL), nine for grain width (GW), and nine …

Molecular mapping and transfer of a novel brown planthopper resistance gene bph42 from Oryza rufipogon (Griff.) To cultivated rice (Oryza sativa L.)

P Kaur, K Neelam, PS Sarao, A Babbar… - Molecular Biology …, 2022 - Springer
Abstract Background Brown planthopper (BPH), Nilaparvata lugens (Stål), is one of the most
destructive pests of rice accounting for 52% of annual yield loss. The breakdown of …

A Genetic Resource for Rice Improvement: Introgression Library of Agronomic Traits for All AA Genome Oryza Species

Y Zhang, J Zhou, P Xu, J Li, X Deng, W Deng… - Frontiers in Plant …, 2022 - frontiersin.org
Rice improvement depends on the availability of genetic variation, and AA genome Oryza
species are the natural reservoir of favorable alleles that are useful for rice breeding. To …