Four principles to establish a universal virus taxonomy

P Simmonds, EM Adriaenssens, FM Zerbini… - PLoS …, 2023 - journals.plos.org
A universal taxonomy of viruses is essential for a comprehensive view of the virus world and
for communicating the complicated evolutionary relationships among viruses. However …

The logic of virus evolution

EV Koonin, VV Dolja, M Krupovic - Cell host & microbe, 2022 - cell.com
Viruses are obligate intracellular parasites. Despite their dependence on host cells, viruses
are evolutionarily autonomous, with their own genomes and evolutionary trajectories locked …

Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome

AA Zayed, JM Wainaina, G Dominguez-Huerta… - Science, 2022 - science.org
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …

Mirusviruses link herpesviruses to giant viruses

M Gaïa, L Meng, E Pelletier, P Forterre, C Vanni… - Nature, 2023 - nature.com
DNA viruses have a major influence on the ecology and evolution of cellular organisms,,–,
but their overall diversity and evolutionary trajectories remain elusive. Here we carried out a …

The Baltimore classification of viruses 50 years later: how does it stand in the light of virus evolution?

EV Koonin, M Krupovic, VI Agol - Microbiology and Molecular …, 2021 - Am Soc Microbiol
SUMMARY Fifty years ago, David Baltimore published a brief conceptual paper delineating
the classification of viruses by the routes of genome expression. The six “Baltimore classes” …

A compendium of viruses from methanogenic archaea reveals their diversity and adaptations to the gut environment

S Medvedeva, G Borrel, M Krupovic, S Gribaldo - Nature Microbiology, 2023 - nature.com
Methanogenic archaea are major producers of methane, a potent greenhouse gas and
biofuel, and are widespread in diverse environments, including the animal gut. The …

Viruses defined by the position of the virosphere within the replicator space

EV Koonin, VV Dolja, M Krupovic… - … and Molecular Biology …, 2021 - Am Soc Microbiol
Originally, viruses were defined as miniscule infectious agents that passed through filters
that retain even the smallest cells. Subsequently, viruses were considered obligate …

The global virome: How much diversity and how many independent origins?

EV Koonin, M Krupovic, VV Dolja - Environmental Microbiology, 2023 - Wiley Online Library
Viruses are considered to be the most abundant biological entities on earth. They also
display striking genetic diversity as emphatically demonstrated by the recent advances of …

The virome from a collection of endomycorrhizal fungi reveals new viral taxa with unprecedented genome organization

S Sutela, M Forgia, EJ Vainio, M Chiapello… - Virus …, 2020 - academic.oup.com
Mutualistic plant-associated fungi are recognized as important drivers in plant evolution,
diversity, and health. The discovery that mycoviruses can take part and play important roles …

The virome of the last eukaryotic common ancestor and eukaryogenesis

M Krupovic, VV Dolja, EV Koonin - Nature microbiology, 2023 - nature.com
All extant eukaryotes descend from the last eukaryotic common ancestor (LECA), which is
thought to have featured complex cellular organization. To gain insight into LECA biology …