How should gaps be treated in parsimony? A comparison of approaches using simulation
TH Ogden, MS Rosenberg - Molecular phylogenetics and evolution, 2007 - Elsevier
Simulation with indels was used to produce alignments where true site homologies in DNA
sequences were known; the gaps from these datasets were removed and the sequences …
sequences were known; the gaps from these datasets were removed and the sequences …
Molecular phylogenetics of core Brassicales, placement of orphan genera Emblingia, Forchhammeria, Tirania, and character evolution
Many genera previously placed in the traditionally circumscribed Capparaceae are either
unrelated or, more commonly, isolated lineages in the order Brassicales. This study …
unrelated or, more commonly, isolated lineages in the order Brassicales. This study …
Phylogenetic relationships of Sambucus and Adoxa (Adoxoideae, Adoxaceae) based on nuclear ribosomal ITS sequences and preliminary morphological data
T Eriksson, MJ Donoghue - Systematic Botany, 1997 - JSTOR
We inferred the phylogeny of Sambucus and Adoxa (Adoxoideae, Adoxaceae) based on
nucleotide sequences of the internal transcribed spacer (ITS) region of nuclear ribosomal …
nucleotide sequences of the internal transcribed spacer (ITS) region of nuclear ribosomal …
Discordance between ITS and chloroplast topologies in the Boykinia group (Saxifragaceae)
DE Soltis, LA Johnson, C Looney - Systematic Botany, 1996 - JSTOR
To assess whether discord exists between nuclear-and chloroplast-based phylogenetic
trees within the Boykinia group (Saxifragaceae), we compared topologies obtained from …
trees within the Boykinia group (Saxifragaceae), we compared topologies obtained from …
Phylogeny and the Evolution of Floral Diversity in Pedicularis (Orobanchaceae)
RH Ree - International Journal of Plant Sciences, 2005 - journals.uchicago.edu
Pedicularis has a conflicted infrageneric taxonomic history in which floral and vegetative
characters have alternately been interpreted as primary indicators of common ancestry …
characters have alternately been interpreted as primary indicators of common ancestry …
The phylogenetic position of Carex section Phyllostachys and its implications for phylogeny and subgeneric circumscription in Carex (Cyperaceae)
JR Starr, RJ Bayer, BA Ford - American Journal of Botany, 1999 - Wiley Online Library
Wide speculation surrounds the origin and phylogenetic relationships of the most highly
reduced sections in the genus Carex. In order to gain a better understanding of phylogeny in …
reduced sections in the genus Carex. In order to gain a better understanding of phylogeny in …
Diversification of the North American shrub genus Ceanothus (Rhamnaceae): conflicting phylogenies from nuclear ribosomal DNA and chloroplast DNA
Ceanothus comprises∼ 55 morphologically and ecologically diverse species of woody
perennials endemic to North America. Interpretations of the natural history of Ceanothus …
perennials endemic to North America. Interpretations of the natural history of Ceanothus …
Phylogenetic analysis of Artemisia section Tridentatae (Asteraceae) based on sequences from the internal transcribed spacers (ITS) of nuclear ribosomal DNA
AB Kornkven, LE Watson… - American Journal of Botany, 1998 - Wiley Online Library
Artemisia sect. Tridentatae is composed of 11 species of xerophytic shrubs, which dominate
much of western North America. Sequences of the internal transcribed spacers (ITS) of …
much of western North America. Sequences of the internal transcribed spacers (ITS) of …
[图书][B] Biogeography and evolution in New Zealand
M Heads - 2016 - taylorfrancis.com
Biogeography and Evolution in New Zealand provides the first in-depth treatment of the
biogeography of New Zealand, a region that has been a place of long-enduring interest to …
biogeography of New Zealand, a region that has been a place of long-enduring interest to …
Analysis of mitochondrial nad1b-c intron sequences in Orchidaceae: utility and coding of length-change characters
JV Freudenstein, MW Chase - Systematic Botany, 2001 - JSTOR
DNA sequences for 100 species representing all subfamilies of Orchidaceae and Hypoxis
as outgroup were produced for the intron between the b and c exons of subunit 1 of …
as outgroup were produced for the intron between the b and c exons of subunit 1 of …