How should gaps be treated in parsimony? A comparison of approaches using simulation

TH Ogden, MS Rosenberg - Molecular phylogenetics and evolution, 2007 - Elsevier
Simulation with indels was used to produce alignments where true site homologies in DNA
sequences were known; the gaps from these datasets were removed and the sequences …

Molecular phylogenetics of core Brassicales, placement of orphan genera Emblingia, Forchhammeria, Tirania, and character evolution

JC Hall, HH Iltis, KJ Sytsma - Systematic Botany, 2004 - ingentaconnect.com
Many genera previously placed in the traditionally circumscribed Capparaceae are either
unrelated or, more commonly, isolated lineages in the order Brassicales. This study …

Phylogenetic relationships of Sambucus and Adoxa (Adoxoideae, Adoxaceae) based on nuclear ribosomal ITS sequences and preliminary morphological data

T Eriksson, MJ Donoghue - Systematic Botany, 1997 - JSTOR
We inferred the phylogeny of Sambucus and Adoxa (Adoxoideae, Adoxaceae) based on
nucleotide sequences of the internal transcribed spacer (ITS) region of nuclear ribosomal …

Discordance between ITS and chloroplast topologies in the Boykinia group (Saxifragaceae)

DE Soltis, LA Johnson, C Looney - Systematic Botany, 1996 - JSTOR
To assess whether discord exists between nuclear-and chloroplast-based phylogenetic
trees within the Boykinia group (Saxifragaceae), we compared topologies obtained from …

Phylogeny and the Evolution of Floral Diversity in Pedicularis (Orobanchaceae)

RH Ree - International Journal of Plant Sciences, 2005 - journals.uchicago.edu
Pedicularis has a conflicted infrageneric taxonomic history in which floral and vegetative
characters have alternately been interpreted as primary indicators of common ancestry …

The phylogenetic position of Carex section Phyllostachys and its implications for phylogeny and subgeneric circumscription in Carex (Cyperaceae)

JR Starr, RJ Bayer, BA Ford - American Journal of Botany, 1999 - Wiley Online Library
Wide speculation surrounds the origin and phylogenetic relationships of the most highly
reduced sections in the genus Carex. In order to gain a better understanding of phylogeny in …

Diversification of the North American shrub genus Ceanothus (Rhamnaceae): conflicting phylogenies from nuclear ribosomal DNA and chloroplast DNA

TM Hardig, PS Soltis, DE Soltis - American Journal of Botany, 2000 - Wiley Online Library
Ceanothus comprises∼ 55 morphologically and ecologically diverse species of woody
perennials endemic to North America. Interpretations of the natural history of Ceanothus …

Phylogenetic analysis of Artemisia section Tridentatae (Asteraceae) based on sequences from the internal transcribed spacers (ITS) of nuclear ribosomal DNA

AB Kornkven, LE Watson… - American Journal of Botany, 1998 - Wiley Online Library
Artemisia sect. Tridentatae is composed of 11 species of xerophytic shrubs, which dominate
much of western North America. Sequences of the internal transcribed spacers (ITS) of …

[图书][B] Biogeography and evolution in New Zealand

M Heads - 2016 - taylorfrancis.com
Biogeography and Evolution in New Zealand provides the first in-depth treatment of the
biogeography of New Zealand, a region that has been a place of long-enduring interest to …

Analysis of mitochondrial nad1b-c intron sequences in Orchidaceae: utility and coding of length-change characters

JV Freudenstein, MW Chase - Systematic Botany, 2001 - JSTOR
DNA sequences for 100 species representing all subfamilies of Orchidaceae and Hypoxis
as outgroup were produced for the intron between the b and c exons of subunit 1 of …