Microbial surface colonization and biofilm development in marine environments

H Dang, CR Lovell - Microbiology and molecular biology reviews, 2016 - Am Soc Microbiol
Biotic and abiotic surfaces in marine waters are rapidly colonized by microorganisms.
Surface colonization and subsequent biofilm formation and development provide numerous …

Marine biodiversity, biogeography, deep-sea gradients, and conservation

MJ Costello, C Chaudhary - Current Biology, 2017 - cell.com
The oceans appear ideal for biodiversity—they have unlimited water, a large area, are well
connected, have less extreme temperatures than on land, and contain more phyla and …

Untangling the genetic basis of fibrolytic specialization by Lachnospiraceae and Ruminococcaceae in diverse gut communities

A Biddle, L Stewart, J Blanchard, S Leschine - Diversity, 2013 - mdpi.com
The Lachnospiraceae and Ruminococcaceae are two of the most abundant families from the
order Clostridiales found in the mammalian gut environment, and have been associated with …

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes

S Roux, SJ Hallam, T Woyke, MB Sullivan - elife, 2015 - elifesciences.org
The ecological importance of viruses is now widely recognized, yet our limited knowledge of
viral sequence space and virus–host interactions precludes accurate prediction of their roles …

Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

Y Deng, P Zhang, Y Qin, Q Tu, Y Yang… - Environmental …, 2016 - Wiley Online Library
Discerning network interactions among different species/populations in microbial
communities has evoked substantial interests in recent years, but little information is …

Genomics and the future of conservation genetics

FW Allendorf, PA Hohenlohe, G Luikart - Nature reviews genetics, 2010 - nature.com
We will soon have complete genome sequences from thousands of species, as well as from
many individuals within species. This coming explosion of information will transform our …

Patterns of rare and abundant marine microbial eukaryotes

R Logares, S Audic, D Bass, L Bittner, C Boutte… - Current Biology, 2014 - cell.com
Background Biological communities are normally composed of a few abundant and many
rare species. This pattern is particularly prominent in microbial communities, in which most …

Microbial nitrogen cycling processes in oxygen minimum zones

P Lam, MMM Kuypers - Annual review of marine science, 2011 - annualreviews.org
Oxygen minimum zones (OMZs) harbor unique microbial communities that rely on
alternative electron acceptors for respiration. Conditions therein enable an almost complete …

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

JA Steele, PD Countway, L Xia, PD Vigil… - The ISME …, 2011 - academic.oup.com
Microbes have central roles in ocean food webs and global biogeochemical processes, yet
specific ecological relationships among these taxa are largely unknown. This is in part due …

Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

R Logares, S Sunagawa, G Salazar… - Environmental …, 2014 - Wiley Online Library
Sequencing of 16S rDNA polymerase chain reaction (PCR) amplicons is the most common
approach for investigating environmental prokaryotic diversity, despite the known biases …