Genomic resources in plant breeding for sustainable agriculture

M Thudi, R Palakurthi, JC Schnable… - Journal of Plant …, 2021 - Elsevier
Climate change during the last 40 years has had a serious impact on agriculture and
threatens global food and nutritional security. From over half a million plant species, cereals …

Genotyping-by-sequencing (GBS), an ultimate marker-assisted selection (MAS) tool to accelerate plant breeding

J He, X Zhao, A Laroche, ZX Lu, HK Liu… - Frontiers in plant …, 2014 - frontiersin.org
Marker-assisted selection (MAS) refers to the use of molecular markers to assist phenotypic
selections in crop improvement. Several types of molecular markers, such as single …

Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet

J Chen, Y Liu, M Liu, W Guo, Y Wang, Q He, W Chen… - Nature Genetics, 2023 - nature.com
Broomcorn millet (Panicum miliaceum L.) is an orphan crop with the potential to improve
cereal production and quality, and ensure food security. Here we present the genetic …

[HTML][HTML] Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

RK Varshney, M Thudi, M Roorkiwal, W He… - Nature …, 2019 - nature.com
We report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-
genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate …

[HTML][HTML] Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings

X Wang, H Wang, S Liu, A Ferjani, J Li, J Yan, X Yang… - Nature …, 2016 - nature.com
Maize production is threatened by drought stress worldwide. Identification of the genetic
components underlying drought tolerance in maize is of great importance. Here we report a …

MaizeGDB 2018: the maize multi-genome genetics and genomics database

JL Portwood, MR Woodhouse, EK Cannon… - Nucleic acids …, 2019 - academic.oup.com
Since its 2015 update, MaizeGDB, the Maize Genetics and Genomics database, has
expanded to support the sequenced genomes of many maize inbred lines in addition to the …

[HTML][HTML] Genome-wide selection and genetic improvement during modern maize breeding

B Wang, Z Lin, X Li, Y Zhao, B Zhao, G Wu, X Ma… - Nature Genetics, 2020 - nature.com
Since the development of single-hybrid maize breeding programs in the first half of the
twentieth century, maize yields have increased over sevenfold, and much of that increase …

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure

SP Gordon, B Contreras-Moreira, DP Woods… - Nature …, 2017 - nature.com
While prokaryotic pan-genomes have been shown to contain many more genes than any
individual organism, the prevalence and functional significance of differentially present …

Diversity and heritability of the maize rhizosphere microbiome under field conditions

JA Peiffer, A Spor, O Koren, Z Jin… - Proceedings of the …, 2013 - National Acad Sciences
The rhizosphere is a critical interface supporting the exchange of resources between plants
and their associated soil environment. Rhizosphere microbial diversity is influenced by the …

The Peach v2. 0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity

I Verde, J Jenkins, L Dondini, S Micali, G Pagliarani… - BMC genomics, 2017 - Springer
Background The availability of the peach genome sequence has fostered relevant research
in peach and related Prunus species enabling the identification of genes underlying …