Recovering complete and draft population genomes from metagenome datasets
Assembly of metagenomic sequence data into microbial genomes is of fundamental value to
improving our understanding of microbial ecology and metabolism by elucidating the …
improving our understanding of microbial ecology and metabolism by elucidating the …
Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity
SA Shabalina, NA Spiridonov… - Nucleic acids research, 2013 - academic.oup.com
Messenger RNA is a key component of an intricate regulatory network of its own. It
accommodates numerous nucleotide signals that overlap protein coding sequences and are …
accommodates numerous nucleotide signals that overlap protein coding sequences and are …
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes
Ammonia-oxidising archaea (AOA) are ubiquitous and abundant in nature and play a major
role in nitrogen cycling. AOA have been studied intensively based on the amoA gene …
role in nitrogen cycling. AOA have been studied intensively based on the amoA gene …
Life-history strategies of soil microbial communities in an arid ecosystem
The overwhelming taxonomic diversity and metabolic complexity of microorganisms can be
simplified by a life-history classification; copiotrophs grow faster and rely on resource …
simplified by a life-history classification; copiotrophs grow faster and rely on resource …
Revisiting the Taxonomy of the Genus Arcobacter: Getting Order From the Chaos
A Pérez-Cataluña, N Salas-Massó… - Frontiers in …, 2018 - frontiersin.org
Since the description of the genus Arcobacter in 1991, a total of 27 species have been
described, although some species have shown 16S rRNA similarities below 95%, which is …
described, although some species have shown 16S rRNA similarities below 95%, which is …
Codon usage bias and environmental adaptation in microbial organisms
D Arella, M Dilucca, A Giansanti - Molecular Genetics and Genomics, 2021 - Springer
In each genome, synonymous codons are used with different frequencies; this general
phenomenon is known as codon usage bias. It has been previously recognised that codon …
phenomenon is known as codon usage bias. It has been previously recognised that codon …
[HTML][HTML] Degradation of host translational machinery drives tRNA acquisition in viruses
Viruses are traditionally thought to be under selective pressure to maintain compact
genomes and thus depend on host cell translational machinery for reproduction. However …
genomes and thus depend on host cell translational machinery for reproduction. However …
Lifestyle transitions in fusarioid fungi are frequent and lack clear genomic signatures
Abstract The fungal genus Fusarium (Ascomycota) includes well-known plant pathogens
that are implicated in diseases worldwide, and many of which have been genome …
that are implicated in diseases worldwide, and many of which have been genome …
[HTML][HTML] Risk assessment and dissemination mechanism of antibiotic resistance genes in compost
Y Xu, L Zhu, S Chen, H Wu, R Li, J Li, J Yuan… - Environment …, 2023 - Elsevier
In recent years, the excessive of antibiotics in livestock and poultry husbandry, stemming
from extensive industry experience, has resulted in the accumulation of residual antibiotics …
from extensive industry experience, has resulted in the accumulation of residual antibiotics …
Repertoires of tRNAs: the couplers of genomics and proteomics
The pool of transfer RNA (tRNA) molecules in cells allows the ribosome to decode genetic
information. This repertoire of molecular decoders is positioned in the crossroad of the …
information. This repertoire of molecular decoders is positioned in the crossroad of the …