Impact of methods on the measurement of mRNA turnover

T Wada, A Becskei - International journal of molecular sciences, 2017 - mdpi.com
The turnover of the RNA molecules is determined by the rates of transcription and RNA
degradation. Several methods have been developed to study RNA turnover since the …

Chemical methods for measuring RNA expression with metabolic labeling

M Singha, L Spitalny, K Nguyen… - Wiley …, 2021 - Wiley Online Library
Tracking the expression of RNA in a cell‐specific manner is a major challenge in basic and
disease research. Herein we outline the current state of employing chemical approaches for …

An optimized chemical-genetic method for cell-specific metabolic labeling of RNA

S Nainar, BJ Cuthbert, NM Lim, WE England, K Ke… - Nature …, 2020 - nature.com
Tissues and organs are composed of diverse cell types, which poses a major challenge for
cell-type-specific profiling of gene expression. Current metabolic labeling methods rely on …

EC-tagging allows cell type-specific RNA analysis

N Hida, MY Aboukilila, DA Burow, R Paul… - Nucleic acids …, 2017 - academic.oup.com
Purification of cell type-specific RNAs remains a significant challenge. One solution involves
biosynthetic tagging of target RNAs. RNA tagging via incorporation of 4-thiouracil (TU) in …

A path toward SARS-CoV-2 attenuation: metabolic pressure on CTP synthesis rules the virus evolution

Z Ou, C Ouzounis, D Wang, W Sun, J Li… - Genome biology and …, 2020 - academic.oup.com
In the context of the COVID-19 pandemic, we describe here the singular metabolic
background that constrains enveloped RNA viruses to evolve toward likely attenuation in the …

Uridine/UMP metabolism and their function on the gut in segregated early weaned piglets

G Li, C Xie, Q Wang, D Wan, Y Zhang, X Wu, Y Yin - Food & Function, 2019 - pubs.rsc.org
Uridine monophosphate (UMP) is a major nucleotide analogue in mammalian milk and
uridine (UR) is its gastro-intestinal metabolite in vivo. This study aims to investigate the …

Chemoenzymatic strategies for RNA modification and labeling

J Mattay, M Dittmar, A Rentmeister - Current Opinion in Chemical Biology, 2021 - Elsevier
RNA is a central molecule in numerous cellular processes, including transcription,
translation, and regulation of gene expression. To reveal the numerous facets of RNA …

The Genetic Basis of Natural Variation in Drosophila melanogaster Immune Defense against Enterococcus faecalis

JR Chapman, MA Dowell, R Chan, RL Unckless - Genes, 2020 - mdpi.com
Dissecting the genetic basis of natural variation in disease response in hosts provides
insights into the coevolutionary dynamics of host-pathogen interactions. Here, a genome …

Orotate phosphoribosyl transferase MoPyr5 is involved in uridine 5′-phosphate synthesis and pathogenesis of Magnaporthe oryzae

Z Qi, M Liu, Y Dong, J Yang, H Zhang, X Zheng… - Applied microbiology …, 2016 - Springer
Orotate phosphoribosyl transferase (OPRTase) plays an important role in de novo and
salvage pathways of nucleotide synthesis and is widely used as a screening marker in …

Physiological characterization of a pyrimidine auxotroph exposes link between uracil phosphoribosyltransferase regulation and riboflavin production in Ashbya …

R Silva, TQ Aguiar, C Oliveira, L Domingues - New biotechnology, 2019 - Elsevier
The blockage of the de novo pyrimidine biosynthetic pathway at the orotidine-5′-phosphate
decarboxylase level was previously demonstrated to affect riboflavin production in the …