Dali server: structural unification of protein families

L Holm - Nucleic acids research, 2022 - academic.oup.com
Protein structure is key to understanding biological function. Structure comparison deciphers
deep phylogenies, providing insight into functional conservation and functional shifts during …

A systematic review of state-of-the-art strategies for machine learning-based protein function prediction

TC Yan, ZX Yue, HQ Xu, YH Liu, YF Hong… - Computers in Biology …, 2023 - Elsevier
New drug discovery is inseparable from the discovery of drug targets, and the vast majority
of the known targets are proteins. At the same time, proteins are essential structural and …

Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh

MM Monir, MT Islam, R Mazumder, D Mondal… - Nature …, 2023 - nature.com
In 2022, one of its worst cholera outbreaks began in Bangladesh and the icddr, b Dhaka
hospital treated more than 1300 patients and ca. 42,000 diarrheal cases from March-1 to …

The draft genome of Spiraea crenata L. (Rosaceae) – the first complete genome in tribe Spiraeeae

L Laczkó, S Jordán, S Póliska, HV Rácz, NA Nagy… - Scientific Data, 2024 - nature.com
Spiraea crenata L. is a deciduous shrub distributed across the Eurasian steppe zone. The
species is of cultural and horticultural importance and occurs in scattered populations …

Evolution of Orthonectida body plan

GS Slyusarev, EK Skalon… - Evolution & …, 2023 - Wiley Online Library
Orthonectida is an enigmatic group of animals with still uncertain phylogenetic position.
Orthonectids parasitize various marine invertebrates. Their life cycle comprises a parasitic …

In silico protein function prediction: the rise of machine learning-based approaches

J Chen, Z Gu, L Lai, J Pei - Medical Review, 2023 - degruyter.com
Proteins function as integral actors in essential life processes, rendering the realm of protein
research a fundamental domain that possesses the potential to propel advancements in …

Identification of QTNs Associated With Flowering Time, Maturity, and Plant Height Traits in Linum usitatissimum L. Using Genome-Wide Association Study

A Saroha, D Pal, SS Gomashe, Akash, V Kaur… - Frontiers in …, 2022 - frontiersin.org
Early flowering, maturity, and plant height are important traits for linseed to fit in rice fallows,
for rainfed agriculture, and for economically viable cultivation. Here, Multi-Locus Genome …

Enhanced viral metagenomics with Lazypipe 2

I Plyusnin, O Vapalahti, T Sironen, R Kant, T Smura - Viruses, 2023 - mdpi.com
Viruses are the main agents causing emerging and re-emerging infectious diseases. It is
therefore important to screen for and detect them and uncover the evolutionary processes …

The proteome of extracellular vesicles of the lung fluke Paragonimus kellicotti produced in vitro and in the lung cyst

LS Di Maggio, K Fischer, D Yates, KC Curtis… - Scientific reports, 2023 - nature.com
Paragonimiasis is a zoonotic, food-borne trematode infection that affects 21 million people
globally. Trematodes interact with their hosts via extracellular vesicles (EV) that carry protein …

Whole genome sequence characterization of Aspergillus terreus ATCC 20541 and genome comparison of the fungi A. terreus

HY Wu, UH Mortensen, FR Chang, HY Tsai - Scientific Reports, 2023 - nature.com
Aspergillus terreus is well-known for lovastatin and itaconic acid production with biomedical
and commercial importance. The mechanisms of metabolite formation have been …