Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic
Determining the transmissibility, prevalence and patterns of movement of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) infections is central to our understanding …
respiratory syndrome coronavirus 2 (SARS-CoV-2) infections is central to our understanding …
Ebola virus disease
ST Jacob, I Crozier, WA Fischer, A Hewlett… - Nature reviews Disease …, 2020 - nature.com
Ebola virus disease (EVD) is a severe and frequently lethal disease caused by Ebola virus
(EBOV). EVD outbreaks typically start from a single case of probable zoonotic transmission …
(EBOV). EVD outbreaks typically start from a single case of probable zoonotic transmission …
Outbreak. info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations
K Gangavarapu, AA Latif, JL Mullen, M Alkuzweny… - Nature …, 2023 - nature.com
In response to the emergence of SARS-CoV-2 variants of concern, the global scientific
community, through unprecedented effort, has sequenced and shared over 11 million …
community, through unprecedented effort, has sequenced and shared over 11 million …
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
The response of the global virus genomics community to the severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) pandemic has been unprecedented, with significant …
syndrome coronavirus 2 (SARS-CoV-2) pandemic has been unprecedented, with significant …
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK
The United Kingdom's COVID-19 epidemic during early 2020 was one of world's largest and
was unusually well represented by virus genomic sampling. We determined the fine-scale …
was unusually well represented by virus genomic sampling. We determined the fine-scale …
Resurgence of Ebola virus in 2021 in Guinea suggests a new paradigm for outbreaks
AK Keita, FR Koundouno, M Faye, A Düx, J Hinzmann… - Nature, 2021 - nature.com
Seven years after the declaration of the first epidemic of Ebola virus disease in Guinea, the
country faced a new outbreak—between 14 February and 19 June 2021—near the …
country faced a new outbreak—between 14 February and 19 June 2021—near the …
Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B. 1.1. 7 emergence
Understanding the causes and consequences of the emergence of severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) variants of concern is crucial to pandemic control yet …
syndrome coronavirus 2 (SARS-CoV-2) variants of concern is crucial to pandemic control yet …
Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study
LW Meredith, WL Hamilton, B Warne… - The Lancet infectious …, 2020 - thelancet.com
Background The burden and influence of health-care associated severe acute respiratory
syndrome coronavirus 2 (SARS-CoV-2) infections is unknown. We aimed to examine the …
syndrome coronavirus 2 (SARS-CoV-2) infections is unknown. We aimed to examine the …
Untangling introductions and persistence in COVID-19 resurgence in Europe
After the first wave of SARS-CoV-2 infections in spring 2020, Europe experienced a
resurgence of the virus starting in late summer 2020 that was deadlier and more difficult to …
resurgence of the virus starting in late summer 2020 that was deadlier and more difficult to …
The episodic resurgence of highly pathogenic avian influenza H5 virus
Highly pathogenic avian influenza (HPAI) H5N1 activity has intensified globally since 2021,
increasingly causing mass mortality in wild birds and poultry and incidental infections in …
increasingly causing mass mortality in wild birds and poultry and incidental infections in …