A review on nonlinear DNA physics

D Chevizovich, D Michieletto… - Royal Society …, 2020 - royalsocietypublishing.org
The study and the investigation of structural and dynamical properties of complex systems
have attracted considerable interest among scientists in general and physicists and …

[HTML][HTML] Inequality in the Frequency of the Open States Occurrence Depends on Single 2H/1H Replacement in DNA

A Basov, M Drobotenko, A Svidlov, E Gerasimenko… - Molecules, 2020 - mdpi.com
In the present study, the effect of 2H/1H isotopic exchange in hydrogen bonds between
nitrogenous base pairs on occurrence and open states zones dynamics is investigated …

[HTML][HTML] Genesis of open states zones in a DNA molecule depends on the localization and value of the torque

S Dzhimak, A Svidlov, A Elkina, E Gerasimenko… - International Journal of …, 2022 - mdpi.com
The formation and dynamics of the open states in a double-stranded DNA molecule are
largely determined by its mechanical parameters. The main one is the torque. However, the …

[HTML][HTML] Influence of Environmental Parameters on the Stability of the DNA Molecule

A Svidlov, M Drobotenko, A Basov, E Gerasimenko… - Entropy, 2021 - mdpi.com
Fluctuations in viscosity within the cell nucleus have wide limits. When a DNA molecule
passes from the region of high viscosity values to the region of low values, open states …

[HTML][HTML] Influence of a single deuterium substitution for protium on the frequency generation of different-size bubbles in IFNA17

A Basov, A Dorohova, V Malyshko, A Moiseev… - International Journal of …, 2023 - mdpi.com
The influence of a single 2H/1H replacement on the frequency generation of different-size
bubbles in the human interferon alpha-17 gene (IFNA17) under various energies was …

Statistical thermodynamics of DNA with open states

AS Nikitiuk, YV Bayandin, OB Naimark - Physica A: Statistical Mechanics …, 2022 - Elsevier
The study in the open states plays an important role in understanding the laws of DNA
biological activity. The techniques of statistical thermodynamics are potentially able of …

On the possibility that local mechanical forcing permits directionally-controlled long-range electron transfer along dna-like molecular wires with no need of an external …

AP Chetverikov, W Ebeling, VD Lakhno… - The European Physical …, 2016 - Springer
It is shown that in DNA-like molecules containing added, excess charges, such as electrons
and holes (cation-radicals), it is possible by highly energetic, local, mechanical excitation at …

On the mechanical analogue of DNA

L Yakushevich - Journal of biological physics, 2017 - Springer
The creation of mechanical analogues of biological systems is known as a useful instrument
that helps to understand better the dynamical mechanisms of the functioning of living …

Trapping and transport of charges in DNA by mobile discrete breathers

AP Chetverikov, KS Sergeev, VD Lakhno - Математическая биология и …, 2018 - mathnet.ru
Numerical simulation of trapping and transport of a charged particle (electron or hole) by
mobile discrete breathers (mobile DB, MDB) in DNA molecule has been provided. Mobile …

Medium viscosity influence on the open states genesis in a DNA molecule

MI Drobotenko, AA Svidlov, АA Dorohova… - Journal of …, 2023 - Taylor & Francis
The studies were carried out by the mathematical modeling of DNA mechanical
deformations. Numerical calculations done for the interferon alpha 17 gene, which consists …