Heterochromatin: guardian of the genome

A Janssen, SU Colmenares… - Annual review of cell and …, 2018 - annualreviews.org
Constitutive heterochromatin is a major component of the eukaryotic nucleus and is
essential for the maintenance of genome stability. Highly concentrated at pericentromeric …

Polyploidy and interspecific hybridization: partners for adaptation, speciation and evolution in plants

K Alix, PR Gérard, T Schwarzacher… - Annals of …, 2017 - academic.oup.com
Background Polyploidy or whole-genome duplication is now recognized as being present in
almost all lineages of higher plants, with multiple rounds of polyploidy occurring in most …

Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell

JJ Doyle, JE Coate - International Journal of Plant Sciences, 2019 - journals.uchicago.edu
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …

Allelic Variation of MYB10 Is the Major Force Controlling Natural Variation in Skin and Flesh Color in Strawberry (Fragaria spp.) Fruit

C Castillejo, V Waurich, H Wagner, R Ramos… - The Plant …, 2020 - academic.oup.com
The fruits of diploid and octoploid strawberry (Fragaria spp) show substantial natural
variation in color due to distinct anthocyanin accumulation and distribution patterns …

The impact of transposable elements in adaptive evolution

L Schrader, J Schmitz - Molecular Ecology, 2019 - Wiley Online Library
The growing knowledge about the influence of transposable elements (TE s) on (a) long‐
term genome and transcriptome evolution;(b) genomic, transcriptomic and epigenetic …

Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

[HTML][HTML] Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution

AS Mason, JF Wendel - Frontiers in Genetics, 2020 - frontiersin.org
Polyploidy is a major force in plant evolution and speciation. In newly formed allopolyploids,
pairing between related chromosomes from different subgenomes (homoeologous …

Post-polyploid diploidization and diversification through dysploid changes

T Mandáková, MA Lysak - Current opinion in plant biology, 2018 - Elsevier
Highlights•Post-polyploid diploidization (PPD) in angiosperms usually operates by
descending dysploidy.•PPD is acting with differing intensities and rates.•Multiple base …

[PDF][PDF] Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry

M Colle, CP Leisner, CM Wai, S Ou, KA Bird… - …, 2019 - academic.oup.com
Abstract Background Highbush blueberry (Vaccinium corymbosum) has long been
consumed for its unique flavor and composition of health-promoting phytonutrients …

[HTML][HTML] Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis

A Rai, H Hirakawa, R Nakabayashi, S Kikuchi… - Nature …, 2021 - nature.com
Plant genomes remain highly fragmented and are often characterized by hundreds to
thousands of assembly gaps. Here, we report chromosome-level reference and phased …