Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis

A Rai, H Hirakawa, R Nakabayashi, S Kikuchi… - Nature …, 2021 - nature.com
Plant genomes remain highly fragmented and are often characterized by hundreds to
thousands of assembly gaps. Here, we report chromosome-level reference and phased …

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation

JF Wendel, D Lisch, G Hu, AS Mason - Current opinion in genetics & …, 2018 - Elsevier
We consider the rapidly advancing discipline of plant evolutionary genomics, with a focus on
the evolution of polyploid genomes. In many lineages, polyploidy is followed by 'biased …

Plant tissue culture environment as a switch-key of (epi) genetic changes

PT Bednarek, R Orłowska - Plant Cell, Tissue and Organ Culture (PCTOC), 2020 - Springer
The in vitro tissue cultures are, beyond all difficulties, an essential tool in basic research as
well as in commercial applications. Numerous works devoted to plant tissue cultures proved …

Genomic selection for forest tree improvement: Methods, achievements and perspectives

VG Lebedev, TN Lebedeva, AI Chernodubov… - Forests, 2020 - mdpi.com
The breeding of forest trees is only a few decades old, and is a much more complicated,
longer, and expensive endeavor than the breeding of agricultural crops. One breeding cycle …

Plant volatile organic compounds evolution: transcriptional regulation, epigenetics and polyploidy

J Picazo-Aragonés, A Terrab, F Balao - International Journal of Molecular …, 2020 - mdpi.com
Volatile organic compounds (VOCs) are emitted by plants as a consequence of their
interaction with biotic and abiotic factors, and have a very important role in plant evolution …

Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment

X Ma, S Vanneste, J Chang, L Ambrosino, K Barry… - Nature plants, 2024 - nature.com
We present chromosome-level genome assemblies from representative species of three
independently evolved seagrass lineages: Posidonia oceanica, Cymodocea nodosa …

Gradual evolution of allopolyploidy in Arabidopsis suecica

R Burns, T Mandáková, J Gunis… - Nature Ecology & …, 2021 - nature.com
Most diploid organisms have polyploid ancestors. The evolutionary process of
polyploidization is poorly understood but has frequently been conjectured to involve some …

The “Polyploid Hop”: shifting challenges and opportunities over the evolutionary lifespan of genome duplications

P Baduel, S Bray, M Vallejo-Marin, F Kolář… - Frontiers in Ecology and …, 2018 - frontiersin.org
The duplication of an entire genome is no small affair. Whole genome duplication (WGD) is
a dramatic mutation with long-lasting effects, yet it occurs repeatedly in all eukaryotic …

Transposon signatures of allopolyploid genome evolution

AM Session, DS Rokhsar - Nature Communications, 2023 - nature.com
Hybridization brings together chromosome sets from two or more distinct progenitor species.
Genome duplication associated with hybridization, or allopolyploidy, allows these …

[HTML][HTML] Transposable element evolution in plant genome ecosystems

M Pulido, JM Casacuberta - Current Opinion in Plant Biology, 2023 - Elsevier
The relationship of transposable elements (TEs) with their host genomes has usually been
seen as an arms race between TEs and their host genomes. Consequently, TEs are …