Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis
A Rai, H Hirakawa, R Nakabayashi, S Kikuchi… - Nature …, 2021 - nature.com
Plant genomes remain highly fragmented and are often characterized by hundreds to
thousands of assembly gaps. Here, we report chromosome-level reference and phased …
thousands of assembly gaps. Here, we report chromosome-level reference and phased …
The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation
We consider the rapidly advancing discipline of plant evolutionary genomics, with a focus on
the evolution of polyploid genomes. In many lineages, polyploidy is followed by 'biased …
the evolution of polyploid genomes. In many lineages, polyploidy is followed by 'biased …
Plant tissue culture environment as a switch-key of (epi) genetic changes
PT Bednarek, R Orłowska - Plant Cell, Tissue and Organ Culture (PCTOC), 2020 - Springer
The in vitro tissue cultures are, beyond all difficulties, an essential tool in basic research as
well as in commercial applications. Numerous works devoted to plant tissue cultures proved …
well as in commercial applications. Numerous works devoted to plant tissue cultures proved …
Genomic selection for forest tree improvement: Methods, achievements and perspectives
VG Lebedev, TN Lebedeva, AI Chernodubov… - Forests, 2020 - mdpi.com
The breeding of forest trees is only a few decades old, and is a much more complicated,
longer, and expensive endeavor than the breeding of agricultural crops. One breeding cycle …
longer, and expensive endeavor than the breeding of agricultural crops. One breeding cycle …
Plant volatile organic compounds evolution: transcriptional regulation, epigenetics and polyploidy
Volatile organic compounds (VOCs) are emitted by plants as a consequence of their
interaction with biotic and abiotic factors, and have a very important role in plant evolution …
interaction with biotic and abiotic factors, and have a very important role in plant evolution …
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment
We present chromosome-level genome assemblies from representative species of three
independently evolved seagrass lineages: Posidonia oceanica, Cymodocea nodosa …
independently evolved seagrass lineages: Posidonia oceanica, Cymodocea nodosa …
Gradual evolution of allopolyploidy in Arabidopsis suecica
R Burns, T Mandáková, J Gunis… - Nature Ecology & …, 2021 - nature.com
Most diploid organisms have polyploid ancestors. The evolutionary process of
polyploidization is poorly understood but has frequently been conjectured to involve some …
polyploidization is poorly understood but has frequently been conjectured to involve some …
The “Polyploid Hop”: shifting challenges and opportunities over the evolutionary lifespan of genome duplications
The duplication of an entire genome is no small affair. Whole genome duplication (WGD) is
a dramatic mutation with long-lasting effects, yet it occurs repeatedly in all eukaryotic …
a dramatic mutation with long-lasting effects, yet it occurs repeatedly in all eukaryotic …
Transposon signatures of allopolyploid genome evolution
AM Session, DS Rokhsar - Nature Communications, 2023 - nature.com
Hybridization brings together chromosome sets from two or more distinct progenitor species.
Genome duplication associated with hybridization, or allopolyploidy, allows these …
Genome duplication associated with hybridization, or allopolyploidy, allows these …
[HTML][HTML] Transposable element evolution in plant genome ecosystems
M Pulido, JM Casacuberta - Current Opinion in Plant Biology, 2023 - Elsevier
The relationship of transposable elements (TEs) with their host genomes has usually been
seen as an arms race between TEs and their host genomes. Consequently, TEs are …
seen as an arms race between TEs and their host genomes. Consequently, TEs are …