Specificities and dynamics of transposable elements in land plants

C Mhiri, F Borges, MA Grandbastien - Biology, 2022 - mdpi.com
Simple Summary Transposable elements are dynamic components of plant genomes, and
display a high diversity of lineages and distribution as the result of evolutionary driving …

Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress

PK Papolu, M Ramakrishnan, S Mullasseri… - Frontiers in plant …, 2022 - frontiersin.org
Long terminal repeat retrotransposons (LTR retrotransposons) are the most abundant group
of mobile genetic elements in eukaryotic genomes and are essential in organizing genomic …

Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome

KH Jia, H Liu, RG Zhang, J Xu, SS Zhou… - Horticulture …, 2021 - academic.oup.com
Polyploidization plays a key role in plant evolution, but the forces driving the fate of
homoeologs in polyploid genomes, ie, paralogs resulting from a whole-genome duplication …

Genome size evolution: towards new model systems for old questions

J Blommaert - Proceedings of the Royal Society B, 2020 - royalsocietypublishing.org
Genome size (GS) variation is a fundamental biological characteristic; however, its
evolutionary causes and consequences are the topic of ongoing debate. Whether GS is a …

On the role of transposable elements in the regulation of gene expression and subgenomic interactions in crop genomes

RA Gill, F Scossa, GJ King, AA Golicz… - Critical Reviews in …, 2021 - Taylor & Francis
Transposable elements (TEs) represent a major and variable portion of plant genomes, and
recent progress in genetics and genomics has highlighted the importance of different TE …

[HTML][HTML] The impact of chromatin on double-strand break repair: Imaging tools and discoveries

MAE van Bueren, A Janssen - DNA repair, 2024 - Elsevier
Eukaryotic nuclei are constantly being exposed to factors that break or chemically modify the
DNA. Accurate repair of this DNA damage is crucial to prevent DNA mutations and maintain …

Integrated annotations and analyses of small RNA–producing loci from 47 diverse plants

A Lunardon, NR Johnson, E Hagerott, T Phifer… - Genome …, 2020 - genome.cshlp.org
Plant endogenous small RNAs (sRNAs) are important regulators of gene expression. There
are two broad categories of plant sRNAs: microRNAs (miRNAs) and endogenous short …

Plant genomes: markers of evolutionary history and drivers of evolutionary change

PS Soltis, DE Soltis - Plants, People, Planet, 2021 - Wiley Online Library
Societal Impact Statement Plant genomes hold the key to understanding the evolutionary
history of plants, a lineage that goes back nearly a billion years and contains nearly half a …

Phylogenomic analyses based on genome-skimming data reveal cyto-nuclear discordance in the evolutionary history of Cotoneaster (Rosaceae)

KK Meng, SF Chen, KW Xu, RC Zhou, MW Li… - Molecular Phylogenetics …, 2021 - Elsevier
As a consequence of hybridization, polyploidization, and apomixis, the genus Cotoneaster
(Rosaceae) represents one of the most complicated and controversial lineages in …

Chromosome evolution in connection with repetitive sequences and epigenetics in plants

SF Li, T Su, GQ Cheng, BX Wang, X Li, CL Deng… - Genes, 2017 - mdpi.com
Chromosome evolution is a fundamental aspect of evolutionary biology. The evolution of
chromosome size, structure and shape, number, and the change in DNA composition …