Exaptation of transposable element coding sequences

Z Joly-Lopez, TE Bureau - Current opinion in genetics & development, 2018 - Elsevier
Transposable elements (TEs) are mobile genetic elements that were once perceived as
merely selfish, but are now recognized as potent agents of adaptation. One way TEs …

DNA methylation repatterning accompanying hybridization, whole genome doubling and homoeolog exchange in nascent segmental rice allotetraploids

N Li, C Xu, A Zhang, R Lv, X Meng, X Lin… - New …, 2019 - Wiley Online Library
Allopolyploidization, which entails interspecific hybridization and whole genome duplication
(WGD), is associated with emergent genetic and epigenetic instabilities that are thought to …

Evolution and diversity of the cotton genome

G Hu, CE Grover, J Jareczek, D Yuan, Y Dong… - Cotton precision …, 2021 - Springer
We present an overview of Gossypium genome evolution and the implications of this
understanding for targeted breeding objectives. The cotton genus (Gossypium) contains …

Use of retrotransposon-derived genetic markers to analyse genomic variability in plants

R Kalendar, A Amenov, A Daniyarov - Functional Plant Biology, 2018 - CSIRO Publishing
Transposable elements (TEs) are common mobile genetic elements comprising several
classes and making up the majority of eukaryotic genomes. The movement and …

[HTML][HTML] Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

J Deneweth, Y Van de Peer, V Vermeirssen - BMC genomics, 2022 - Springer
Background Transposable elements (TE) make up a large portion of many plant genomes
and are playing innovative roles in genome evolution. Several TEs can contribute to gene …

Weeds: against the rules?

L Mahaut, PO Cheptou, G Fried, F Munoz… - Trends in Plant …, 2020 - cell.com
Establishing laws of plant and ecosystems functioning has been an overarching objective of
functional and evolutionary ecology. However, most theories neglect the role of human …

Subgenomic Stability of Progenitor Genomes During Repeated Allotetraploid Origins of the Same Grass Brachypodium hybridum

W Mu, K Li, Y Yang, A Breiman, J Yang… - Molecular Biology …, 2023 - academic.oup.com
Both homeologous exchanges and homeologous expression bias are generally found in
most allopolyploid species. Whether homeologous exchanges and homeologous …

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome

LK Padgitt‐Cobb, SB Kingan, J Wells, J Elser… - The plant …, 2021 - Wiley Online Library
Hop (Humulus lupulus L. var Lupulus) is a diploid, dioecious plant with a history of
cultivation spanning more than one thousand years. Hop cones are valued for their use in …

Mobility connects: transposable elements wire new transcriptional networks by transferring transcription factor binding motifs

Y Qiu, C Köhler - Biochemical Society Transactions, 2020 - portlandpress.com
Transposable elements (TEs) constitute major fractions of plant genomes. Their potential to
be mobile provides them with the capacity to cause major genome rearrangements. Those …

Whole‐Genome Sequence of Synthesized Allopolyploids in Cucumis Reveals Insights into the Genome Evolution of Allopolyploidization

X Yu, P Wang, J Li, Q Zhao, C Ji, Z Zhu… - Advanced …, 2021 - Wiley Online Library
The importance of allopolyploidy in plant evolution has been widely recognized. The genetic
changes triggered by allopolyploidy, however, are not yet fully understood due to …