Earth Biogenome Project: present status and future plans
PK Gupta - Trends in Genetics, 2022 - cell.com
Earth Biogenome Project (EBP) is an ambitious project targeted to provide high-quality
reference genome sequences for all 1.8 million named extant (living) eukaryote species …
reference genome sequences for all 1.8 million named extant (living) eukaryote species …
Alignment-and reference-free phylogenomics with colored de Bruijn graphs
R Wittler - Algorithms for Molecular Biology, 2020 - Springer
Background The increasing amount of available genome sequence data enables large-
scale comparative studies. A common task is the inference of phylogenies—a challenging …
scale comparative studies. A common task is the inference of phylogenies—a challenging …
Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools
Background Metagenomic approaches have revealed the complexity of environmental
microbiomes with the advancement in whole genome sequencing displaying a significant …
microbiomes with the advancement in whole genome sequencing displaying a significant …
Modeling evolutionary changes of k-mer patterns of bacterial genomes
ON Reva - Phylogenomics, 2024 - Elsevier
Patterns of frequencies of k-mers in genome-scale sequences bear strong phylogenetic
signals. Several popular algorithms for conversion of k-mer frequencies to evolutionary …
signals. Several popular algorithms for conversion of k-mer frequencies to evolutionary …