High‐throughput metagenomics for identification of pathogens in the clinical settings
N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …
owing to rapid technological developments and substantially reduced costs. However …
Metagenomic next generation sequencing for the diagnosis of tuberculosis meningitis: A systematic review and meta-analysis
G Yu, W Zhao, Y Shen, P Zhu, H Zheng - PloS one, 2020 - journals.plos.org
Background Tuberculous meningitis (TBM) is a severe form of extrapulmonary tuberculosis
and its early diagnosis is very difficult leading to present with severe disability or die. The …
and its early diagnosis is very difficult leading to present with severe disability or die. The …
The human “contaminome”: bacterial, viral, and computational contamination in whole genome sequences from 1000 families
The unmapped readspace of whole genome sequencing data tends to be large but is often
ignored. We posit that it contains valuable signals of both human infection and …
ignored. We posit that it contains valuable signals of both human infection and …
Nanopore metagenomic sequencing for detection and characterization of SARS-CoV-2 in clinical samples
NPG Gauthier, C Nelson, MB Bonsall, K Locher… - PLoS …, 2021 - journals.plos.org
Objectives The COVID-19 pandemic has underscored the need for rapid novel diagnostic
strategies. Metagenomic Next-Generation Sequencing (mNGS) may allow for the detection …
strategies. Metagenomic Next-Generation Sequencing (mNGS) may allow for the detection …
Metagenomic next-generation sequencing of cell-free and whole-cell DNA in diagnosing central nervous system infections
L Yu, Y Zhang, J Zhou, Y Zhang, X Qi, K Bai… - Frontiers in Cellular …, 2022 - frontiersin.org
Background Central nervous system (CNS) infections pose a fatal risk to patients. However,
the limited sample volumes of cerebrospinal fluid (CSF) and low detection efficiency …
the limited sample volumes of cerebrospinal fluid (CSF) and low detection efficiency …
Human papillomavirus detection by whole-genome next-generation sequencing: importance of validation and quality assurance procedures
LS Arroyo Mühr, D Guerendiain, K Cuschieri… - Viruses, 2021 - mdpi.com
Next-generation sequencing (NGS) yields powerful opportunities for studying human
papillomavirus (HPV) genomics for applications in epidemiology, public health, and clinical …
papillomavirus (HPV) genomics for applications in epidemiology, public health, and clinical …
Metagenomic next-generation sequencing for the diagnosis of neonatal infectious diseases
L Chen, Y Zhao, J Wei, W Huang, Y Ma… - Microbiology …, 2022 - Am Soc Microbiol
Infectious diseases pose a fatal risk to neonates. Timely and accurate pathogen detection is
crucial for proper clinical diagnosis and therapeutic strategies. Limited sample volumes from …
crucial for proper clinical diagnosis and therapeutic strategies. Limited sample volumes from …
Comparison of the efficacy of metagenomic next-generation sequencing and Xpert MTB/RIF in the diagnosis of tuberculous meningitis
G Yu, X Wang, P Zhu, Y Shen, W Zhao… - Journal of Microbiological …, 2021 - Elsevier
Metagenomic next-generation sequencing (mNGS) is an emerging sequence-based method
that detects genomic information of pathogenic microorganisms from a wide range of clinical …
that detects genomic information of pathogenic microorganisms from a wide range of clinical …
Diagnostic performance of metagenomic next-generation sequencing for Pneumocystis jirovecii pneumonia
X Li, Z Li, J Ye, W Ye - BMC Infectious Diseases, 2023 - Springer
Objective Pneumocystis jirovecii pneumonia (PJP) can be a life-threatening opportunistic
infection. We aimed to evaluate the diagnostic accuracy of metagenomic next-generation …
infection. We aimed to evaluate the diagnostic accuracy of metagenomic next-generation …
Performance of metagenomic next-generation sequencing for the diagnosis of cryptococcal meningitis in HIV-negative patients
Z Gan, J Liu, Y Wang, L Yang, Z Lou, H Xia… - Frontiers in Cellular …, 2022 - frontiersin.org
Objectives Metagenomic next-generation sequencing (mNGS) has been applied more and
more widely for the diagnosis of infectious diseases, but its performance in the diagnosis of …
more widely for the diagnosis of infectious diseases, but its performance in the diagnosis of …