Phosphoproteomics in the age of rapid and deep proteome profiling

NM Riley, JJ Coon - Analytical chemistry, 2016 - ACS Publications
Protein phosphorylation is a post-translational modification (PTM) that orchestrates a diverse
array of cellular processes. Because this modification serves as a rapid and reversible …

Targeted quantitation of proteins by mass spectrometry

DC Liebler, LJ Zimmerman - Biochemistry, 2013 - ACS Publications
Quantitative measurement of proteins is one of the most fundamental analytical tasks in a
biochemistry laboratory, but widely used immunochemical methods often have limited …

High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform

SJ Humphrey, O Karayel, DE James, M Mann - Nature protocols, 2018 - nature.com
Mass spectrometry has transformed the field of cell signaling by enabling global studies of
dynamic protein phosphorylation ('phosphoproteomics'). Recent developments are enabling …

Immunoaffinity enrichment and mass spectrometry analysis of protein methylation

A Guo, H Gu, J Zhou, D Mulhern, Y Wang… - Molecular & Cellular …, 2014 - ASBMB
Protein methylation is a common posttranslational modification that mostly occurs on
arginine and lysine residues. Arginine methylation has been reported to regulate RNA …

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

JV Olsen, M Vermeulen, A Santamaria, C Kumar… - Science …, 2010 - science.org
Eukaryotic cells replicate by a complex series of evolutionarily conserved events that are
tightly regulated at defined stages of the cell division cycle. Progression through this cycle …

[HTML][HTML] Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints

DF Zielinska, F Gnad, JR Wiśniewski, M Mann - Cell, 2010 - cell.com
N-linked glycosylation is a biologically important protein modification, but only a small
fraction of modification sites have been mapped. We developed a" filter aided sample …

Virtual ligand screening of the p300/CBP histone acetyltransferase: identification of a selective small molecule inhibitor

EM Bowers, G Yan, C Mukherjee, A Orry, L Wang… - Chemistry & biology, 2010 - cell.com
The histone acetyltransferase (HAT) p300/CBP is a transcriptional coactivator implicated in
many gene regulatory pathways and protein acetylation events. Although p300 inhibitors …

Quantitative proteomics using SILAC: Principles, applications, and developments

X Chen, S Wei, Y Ji, X Guo, F Yang - Proteomics, 2015 - Wiley Online Library
SILAC is based on direct addition of selected stable isotope amino acids into the cell culture
medium, allowing superior quantitative analysis of the cellular proteome compared to other …

Decoding signalling networks by mass spectrometry-based proteomics

C Choudhary, M Mann - Nature reviews Molecular cell biology, 2010 - nature.com
Signalling networks regulate essentially all of the biology of cells and organisms in normal
and disease states. Signalling is often studied using antibody-based techniques such as …

Mass-spectrometry-based molecular characterization of extracellular vesicles: lipidomics and proteomics

S Kreimer, AM Belov, I Ghiran, SK Murthy… - Journal of proteome …, 2015 - ACS Publications
This review discusses extracellular vesicles (EVs), which are submicron-scale, anuclear,
phospholipid bilayer membrane enclosed vesicles that contain lipids, metabolites, proteins …