[HTML][HTML] Chromatin modules and their implication in genomic organization and gene regulation

G van Mierlo, O Pushkarev, JF Kribelbauer… - Trends in Genetics, 2023 - cell.com
Regulation of gene expression is a complex but highly guided process. While genomic
technologies and computational approaches have allowed high-throughput mapping of cis …

[HTML][HTML] Androgen receptor-mediated transcription in prostate cancer

D Özturan, T Morova, NA Lack - Cells, 2022 - mdpi.com
Androgen receptor (AR)-mediated transcription is critical in almost all stages of prostate
cancer (PCa) growth and differentiation. This process involves a complex interplay of …

[HTML][HTML] PAX3-FOXO1 dictates myogenic reprogramming and rhabdomyosarcoma identity in endothelial progenitors

MB Searcy, RK Larsen IV, BT Stevens, Y Zhang… - Nature …, 2023 - nature.com
Fusion-positive rhabdomyosarcoma (FP-RMS) driven by the expression of the PAX3-FOXO1
(P3F) fusion oncoprotein is an aggressive subtype of pediatric rhabdomyosarcoma. FP-RMS …

Probing cell identity hierarchies by fate titration and collision during direct reprogramming

BA Hersbach, DS Fischer, G Masserdotti… - Molecular Systems …, 2022 - embopress.org
Despite the therapeutic promise of direct reprogramming, basic principles concerning fate
erasure and the mechanisms to resolve cell identity conflicts remain unclear. To tackle these …

SWI/SNF blockade disrupts PU. 1-directed enhancer programs in normal hematopoietic cells and acute myeloid leukemia

C Chambers, K Cermakova, YS Chan, K Kurtz… - Cancer research, 2023 - AACR
In acute myeloid leukemia (AML), SWI/SNF chromatin remodeling complexes sustain
leukemic identity by driving high levels of MYC. Previous studies have implicated the …

[HTML][HTML] Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development

F Darbellay, A Ramisch, L Lopez-Delisle… - Nature …, 2024 - nature.com
Chondrocyte differentiation controls skeleton development and stature. Here we provide a
comprehensive map of chondrocyte-specific enhancers and show that they provide a …

[HTML][HTML] Cellular reprogramming in vivo initiated by SOX4 pioneer factor activity

T Katsuda, JH Sussman, K Ito, A Katznelson… - Nature …, 2024 - nature.com
Tissue damage elicits cell fate switching through a process called metaplasia, but how the
starting cell fate is silenced and the new cell fate is activated has not been investigated in …

[PDF][PDF] The 3D chromatin landscape of rhabdomyosarcoma

M Wang, P Sreenivas, BD Sunkel, L Wang… - NAR …, 2023 - academic.oup.com
Rhabdomyosarcoma (RMS) is a pediatric soft tissue cancer with a lack of precision therapy
options for patients. We hypothesized that with a general paucity of known mutations in …

[HTML][HTML] Pioneer factors in viral infection

E Neugebauer, AM Bastidas-Quintero… - Frontiers in …, 2023 - frontiersin.org
Pioneer factors are transcription factors sharing the fascinating ability to bind to compact
chromatin and thereby alter its transcriptional fate. Most pioneer factors are known for their …

[HTML][HTML] Characterizing Different Modes of Interplay Between Rap1 and H3 Using Inducible H3-depletion Yeast

P Khamwachirapithak, D Guillaume-Schoepfer… - Journal of Molecular …, 2023 - Elsevier
Histones and transcription factors (TFs) are two important DNA-binding proteins that interact,
compete, and together regulate transcriptional processes in response to diverse internal and …