[HTML][HTML] Chromatin modules and their implication in genomic organization and gene regulation
G van Mierlo, O Pushkarev, JF Kribelbauer… - Trends in Genetics, 2023 - cell.com
Regulation of gene expression is a complex but highly guided process. While genomic
technologies and computational approaches have allowed high-throughput mapping of cis …
technologies and computational approaches have allowed high-throughput mapping of cis …
[HTML][HTML] Androgen receptor-mediated transcription in prostate cancer
Androgen receptor (AR)-mediated transcription is critical in almost all stages of prostate
cancer (PCa) growth and differentiation. This process involves a complex interplay of …
cancer (PCa) growth and differentiation. This process involves a complex interplay of …
[HTML][HTML] PAX3-FOXO1 dictates myogenic reprogramming and rhabdomyosarcoma identity in endothelial progenitors
MB Searcy, RK Larsen IV, BT Stevens, Y Zhang… - Nature …, 2023 - nature.com
Fusion-positive rhabdomyosarcoma (FP-RMS) driven by the expression of the PAX3-FOXO1
(P3F) fusion oncoprotein is an aggressive subtype of pediatric rhabdomyosarcoma. FP-RMS …
(P3F) fusion oncoprotein is an aggressive subtype of pediatric rhabdomyosarcoma. FP-RMS …
Probing cell identity hierarchies by fate titration and collision during direct reprogramming
BA Hersbach, DS Fischer, G Masserdotti… - Molecular Systems …, 2022 - embopress.org
Despite the therapeutic promise of direct reprogramming, basic principles concerning fate
erasure and the mechanisms to resolve cell identity conflicts remain unclear. To tackle these …
erasure and the mechanisms to resolve cell identity conflicts remain unclear. To tackle these …
SWI/SNF blockade disrupts PU. 1-directed enhancer programs in normal hematopoietic cells and acute myeloid leukemia
C Chambers, K Cermakova, YS Chan, K Kurtz… - Cancer research, 2023 - AACR
In acute myeloid leukemia (AML), SWI/SNF chromatin remodeling complexes sustain
leukemic identity by driving high levels of MYC. Previous studies have implicated the …
leukemic identity by driving high levels of MYC. Previous studies have implicated the …
[HTML][HTML] Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development
F Darbellay, A Ramisch, L Lopez-Delisle… - Nature …, 2024 - nature.com
Chondrocyte differentiation controls skeleton development and stature. Here we provide a
comprehensive map of chondrocyte-specific enhancers and show that they provide a …
comprehensive map of chondrocyte-specific enhancers and show that they provide a …
[HTML][HTML] Cellular reprogramming in vivo initiated by SOX4 pioneer factor activity
T Katsuda, JH Sussman, K Ito, A Katznelson… - Nature …, 2024 - nature.com
Tissue damage elicits cell fate switching through a process called metaplasia, but how the
starting cell fate is silenced and the new cell fate is activated has not been investigated in …
starting cell fate is silenced and the new cell fate is activated has not been investigated in …
[PDF][PDF] The 3D chromatin landscape of rhabdomyosarcoma
Rhabdomyosarcoma (RMS) is a pediatric soft tissue cancer with a lack of precision therapy
options for patients. We hypothesized that with a general paucity of known mutations in …
options for patients. We hypothesized that with a general paucity of known mutations in …
[HTML][HTML] Pioneer factors in viral infection
E Neugebauer, AM Bastidas-Quintero… - Frontiers in …, 2023 - frontiersin.org
Pioneer factors are transcription factors sharing the fascinating ability to bind to compact
chromatin and thereby alter its transcriptional fate. Most pioneer factors are known for their …
chromatin and thereby alter its transcriptional fate. Most pioneer factors are known for their …
[HTML][HTML] Characterizing Different Modes of Interplay Between Rap1 and H3 Using Inducible H3-depletion Yeast
P Khamwachirapithak, D Guillaume-Schoepfer… - Journal of Molecular …, 2023 - Elsevier
Histones and transcription factors (TFs) are two important DNA-binding proteins that interact,
compete, and together regulate transcriptional processes in response to diverse internal and …
compete, and together regulate transcriptional processes in response to diverse internal and …