[HTML][HTML] Daphnia as a versatile model system in ecology and evolution

D Ebert - EvoDevo, 2022 - Springer
Water fleas of the genus Daphnia have been a model system for hundreds of years and is
among the best studied ecological model organisms to date. Daphnia are planktonic …

Evolution by gene loss

R Albalat, C Cañestro - Nature Reviews Genetics, 2016 - nature.com
The recent increase in genomic data is revealing an unexpected perspective of gene loss as
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …

[HTML][HTML] Penaeid shrimp genome provides insights into benthic adaptation and frequent molting

X Zhang, J Yuan, Y Sun, S Li, YI Gao, Y Yu… - Nature …, 2019 - nature.com
Crustacea, the subphylum of Arthropoda which dominates the aquatic environment, is of
major importance in ecology and fisheries. Here we report the genome sequence of the …

Net effects of multiple stressors in freshwater ecosystems: a meta‐analysis

MC Jackson, CJG Loewen, RD Vinebrooke… - Global change …, 2016 - Wiley Online Library
The accelerating rate of global change has focused attention on the cumulative impacts of
novel and extreme environmental changes (ie stressors), especially in marine ecosystems …

[HTML][HTML] Genomic insights into the Ixodes scapularis tick vector of Lyme disease

M Gulia-Nuss, AB Nuss, JM Meyer… - Nature …, 2016 - nature.com
Ticks transmit more pathogens to humans and animals than any other arthropod. We
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …

Phylogenomics resolves the timing and pattern of insect evolution

B Misof, S Liu, K Meusemann, RS Peters, A Donath… - Science, 2014 - science.org
Insects are the most speciose group of animals, but the phylogenetic relationships of many
major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein …

Phylogenomics and the evolution of hemipteroid insects

KP Johnson, CH Dietrich, F Friedrich… - Proceedings of the …, 2018 - National Acad Sciences
Hemipteroid insects (Paraneoptera), with over 10% of all known insect diversity, are a major
component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not …

Eco-Corona vs Protein Corona: Effects of Humic Substances on Corona Formation and Nanoplastic Particle Toxicity in Daphnia magna

OO Fadare, B Wan, K Liu, Y Yang… - … science & technology, 2020 - ACS Publications
Despite many studies on the toxicity of nanoplastic particles (NPPs) to aquatic invertebrates,
the effects of ecological constituents such as humic substances (HSs) are often neglected. In …

Polystyrene nanoplastic induces oxidative stress, immune defense, and glycometabolism change in Daphnia pulex: application of transcriptome profiling in risk …

Z Liu, Y Li, E Pérez, Q Jiang, Q Chen, Y Jiao… - Journal of Hazardous …, 2021 - Elsevier
Aquatic environments are generally contaminated with nanoplastic material. As a result,
molecular mechanisms for sensitive species like Daphnia are needed, given that …

Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3

MV Han, GWC Thomas… - … biology and evolution, 2013 - academic.oup.com
Current sequencing methods produce large amounts of data, but genome assemblies
constructed from these data are often fragmented and incomplete. Incomplete and error …