The Ccr4–not complex

MA Collart, OO Panasenko - Gene, 2012 - Elsevier
The Ccr4–Not complex is a unique, essential and conserved multi-subunit complex that acts
at the level of many different cellular functions to regulate gene expression. Two enzymatic …

[HTML][HTML] The Ess1 prolyl isomerase: traffic cop of the RNA polymerase II transcription cycle

SD Hanes - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2014 - Elsevier
Ess1 is a prolyl isomerase that regulates the structure and function of eukaryotic RNA
polymerase II. Ess1 works by catalyzing the cis/trans conversion of pSer5–Pro6 bonds, and …

[HTML][HTML] Functional analysis of a random-sequence chromosome reveals a high level and the molecular nature of transcriptional noise in yeast cells

Z Gvozdenov, Z Barcutean, K Struhl - Molecular cell, 2023 - cell.com
We measure transcriptional noise in yeast by analyzing chromatin structure and transcription
of an 18-kb region of DNA whose sequence was randomly generated. Nucleosomes fully …

lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast

S Shah, S Wittmann, C Kilchert… - Genes & …, 2014 - genesdev.cshlp.org
Numerous noncoding transcripts of unknown function have recently been identified. In this
study, we report a novel mechanism that relies on transcription of noncoding RNA prt (pho1 …

The DEAD-box RNA Helicase Dbp2 Connects RNA Quality Control with Repression of Aberrant Transcription*♦

SC Cloutier, WK Ma, LT Nguyen, EJ Tran - Journal of Biological Chemistry, 2012 - ASBMB
Background: Dbp2 is a member of the DEAD-box family of RNA helicases. Results: Dbp2 is
a double-stranded RNA-specific ATPase required for repression of cryptic initiation and …

Nab3 facilitates the function of the TRAMP complex in RNA processing via recruitment of Rrp6 independent of Nrd1

MB Fasken, RN Laribee, AH Corbett - PLoS genetics, 2015 - journals.plos.org
Non-coding RNAs (ncRNAs) play critical roles in gene regulation. In eukaryotic cells,
ncRNAs are processed and/or degraded by the nuclear exosome, a ribonuclease complex …

Nuclear noncoding RNA surveillance: is the end in sight?

SL Wolin, S Sim, X Chen - Trends in genetics, 2012 - cell.com
Nuclear noncoding RNA (ncRNA) surveillance pathways play key roles in shaping the
steady-state transcriptomes of eukaryotic cells. Defective and unneeded ncRNAs are …

Loosening chromatin and dysregulated transcription: a perspective on cryptic transcription during mammalian aging

BS McCauley, W Dang - Briefings in Functional Genomics, 2022 - academic.oup.com
Cryptic transcription, the initiation of transcription from non-promoter regions within a gene
body, is a type of transcriptional dysregulation that occurs throughout eukaryotes. In …

Expression profiles of PIWIL2 short isoforms differ in testicular germ cell tumors of various differentiation subtypes

IV Gainetdinov, YV Skvortsova, EA Stukacheva… - PloS one, 2014 - journals.plos.org
PIWI family proteins have recently emerged as essential contributors in numerous biological
processes including germ cell development, stem cell maintenance and epigenetic …

Rpp29 regulates histone H3. 3 chromatin assembly through transcriptional mechanisms

PK Shastrula, PJ Lund, BA Garcia… - Journal of Biological …, 2018 - ASBMB
The histone H3 variant H3. 3 is a highly conserved and dynamic regulator of chromatin
organization. Therefore, fully elucidating its nucleosome incorporation mechanisms is …