The Ccr4–not complex
MA Collart, OO Panasenko - Gene, 2012 - Elsevier
The Ccr4–Not complex is a unique, essential and conserved multi-subunit complex that acts
at the level of many different cellular functions to regulate gene expression. Two enzymatic …
at the level of many different cellular functions to regulate gene expression. Two enzymatic …
[HTML][HTML] The Ess1 prolyl isomerase: traffic cop of the RNA polymerase II transcription cycle
SD Hanes - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2014 - Elsevier
Ess1 is a prolyl isomerase that regulates the structure and function of eukaryotic RNA
polymerase II. Ess1 works by catalyzing the cis/trans conversion of pSer5–Pro6 bonds, and …
polymerase II. Ess1 works by catalyzing the cis/trans conversion of pSer5–Pro6 bonds, and …
[HTML][HTML] Functional analysis of a random-sequence chromosome reveals a high level and the molecular nature of transcriptional noise in yeast cells
Z Gvozdenov, Z Barcutean, K Struhl - Molecular cell, 2023 - cell.com
We measure transcriptional noise in yeast by analyzing chromatin structure and transcription
of an 18-kb region of DNA whose sequence was randomly generated. Nucleosomes fully …
of an 18-kb region of DNA whose sequence was randomly generated. Nucleosomes fully …
lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast
Numerous noncoding transcripts of unknown function have recently been identified. In this
study, we report a novel mechanism that relies on transcription of noncoding RNA prt (pho1 …
study, we report a novel mechanism that relies on transcription of noncoding RNA prt (pho1 …
The DEAD-box RNA Helicase Dbp2 Connects RNA Quality Control with Repression of Aberrant Transcription*♦
SC Cloutier, WK Ma, LT Nguyen, EJ Tran - Journal of Biological Chemistry, 2012 - ASBMB
Background: Dbp2 is a member of the DEAD-box family of RNA helicases. Results: Dbp2 is
a double-stranded RNA-specific ATPase required for repression of cryptic initiation and …
a double-stranded RNA-specific ATPase required for repression of cryptic initiation and …
Nab3 facilitates the function of the TRAMP complex in RNA processing via recruitment of Rrp6 independent of Nrd1
Non-coding RNAs (ncRNAs) play critical roles in gene regulation. In eukaryotic cells,
ncRNAs are processed and/or degraded by the nuclear exosome, a ribonuclease complex …
ncRNAs are processed and/or degraded by the nuclear exosome, a ribonuclease complex …
Nuclear noncoding RNA surveillance: is the end in sight?
SL Wolin, S Sim, X Chen - Trends in genetics, 2012 - cell.com
Nuclear noncoding RNA (ncRNA) surveillance pathways play key roles in shaping the
steady-state transcriptomes of eukaryotic cells. Defective and unneeded ncRNAs are …
steady-state transcriptomes of eukaryotic cells. Defective and unneeded ncRNAs are …
Loosening chromatin and dysregulated transcription: a perspective on cryptic transcription during mammalian aging
BS McCauley, W Dang - Briefings in Functional Genomics, 2022 - academic.oup.com
Cryptic transcription, the initiation of transcription from non-promoter regions within a gene
body, is a type of transcriptional dysregulation that occurs throughout eukaryotes. In …
body, is a type of transcriptional dysregulation that occurs throughout eukaryotes. In …
Expression profiles of PIWIL2 short isoforms differ in testicular germ cell tumors of various differentiation subtypes
IV Gainetdinov, YV Skvortsova, EA Stukacheva… - PloS one, 2014 - journals.plos.org
PIWI family proteins have recently emerged as essential contributors in numerous biological
processes including germ cell development, stem cell maintenance and epigenetic …
processes including germ cell development, stem cell maintenance and epigenetic …
Rpp29 regulates histone H3. 3 chromatin assembly through transcriptional mechanisms
PK Shastrula, PJ Lund, BA Garcia… - Journal of Biological …, 2018 - ASBMB
The histone H3 variant H3. 3 is a highly conserved and dynamic regulator of chromatin
organization. Therefore, fully elucidating its nucleosome incorporation mechanisms is …
organization. Therefore, fully elucidating its nucleosome incorporation mechanisms is …