Biosynthesis and regulation of phenylpropanoids in plants

Y Deng, S Lu - Critical Reviews in Plant Sciences, 2017 - Taylor & Francis
Phenylpropanoids are a large class of plant secondary metabolites derived from aromatic
amino acids phenylalanine in most plants or tyrosine in partial monocots. It mainly includes …

Revisiting criteria for plant microRNA annotation in the era of big data

MJ Axtell, BC Meyers - The Plant Cell, 2018 - academic.oup.com
Abstract MicroRNAs (miRNAs) are∼ 21-nucleotide-long regulatory RNAs that arise from
endonucleolytic processing of hairpin precursors. Many function as essential …

[HTML][HTML] One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

[HTML][HTML] A super pan-genomic landscape of rice

L Shang, X Li, H He, Q Yuan, Y Song, Z Wei, H Lin… - Cell research, 2022 - nature.com
Pan-genomes from large natural populations can capture genetic diversity and reveal
genomic complexity. Using de novo long-read assembly, we generated a graph-based …

[HTML][HTML] The Taxus genome provides insights into paclitaxel biosynthesis

X Xiong, J Gou, Q Liao, Y Li, Q Zhou, G Bi, C Li, R Du… - Nature Plants, 2021 - nature.com
The ancient gymnosperm genus Taxus is the exclusive source of the anticancer drug
paclitaxel, yet no reference genome sequences are available for comprehensively …

[PDF][PDF] Insights into land plant evolution garnered from the Marchantia polymorpha genome

JL Bowman, T Kohchi, KT Yamato, J Jenkins, S Shu… - Cell, 2017 - cell.com
The evolution of land flora transformed the terrestrial environment. Land plants evolved from
an ancestral charophycean alga from which they inherited developmental, biochemical, and …

LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons

S Ou, N Jiang - Plant physiology, 2018 - academic.oup.com
Long terminal repeat retrotransposons (LTR-RTs) are prevalent in plant genomes. The
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …

[HTML][HTML] The water lily genome and the early evolution of flowering plants

L Zhang, F Chen, X Zhang, Z Li, Y Zhao, R Lohaus… - Nature, 2020 - nature.com
Water lilies belong to the angiosperm order Nymphaeales. Amborellales, Nymphaeales and
Austrobaileyales together form the so-called ANA-grade of angiosperms, which are extant …

[HTML][HTML] Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li, R Wang, S Zhang… - Genome biology, 2019 - Springer
Background The sharp increase of plant genome and transcriptome data provide valuable
resources to investigate evolutionary consequences of gene duplication in a range of taxa …

[HTML][HTML] Evolutionary history of Coleoptera revealed by extensive sampling of genes and species

SQ Zhang, LH Che, Y Li, D Liang, H Pang… - Nature …, 2018 - nature.com
Beetles (Coleoptera) are the most diverse and species-rich group of insects, and a robust,
time-calibrated phylogeny is fundamental to understanding macroevolutionary processes …