Jaguar: A high‐performance quantum chemistry software program with strengths in life and materials sciences

AD Bochevarov, E Harder, TF Hughes… - … Journal of Quantum …, 2013 - Wiley Online Library
Jaguar is an ab initio quantum chemical program that specializes in fast electronic structure
predictions for molecular systems of medium and large size. Jaguar focuses on …

Triterpenoid saponins from the genus Camellia: Structures, biological activities, and molecular simulation for structure–activity relationship

C Cui, J Zong, Y Sun, L Zhang, CT Ho, X Wan… - Food & function, 2018 - pubs.rsc.org
This review summarizes the isolation, chemical identification, and biochemical activities of
Camellia triterpenoid saponins, updating a previous review and encompassing all new …

Investigation of the newly characterized baimantuoluoamide a and baimantuoluoamide b alkaloids as potential cyclin-dependent kinase 4 (CDK4) inhibitors using …

K Gurushankar, H Rimac, V Potemkin… - Journal of Molecular …, 2021 - Elsevier
CDK4 is an enzyme often associated with various forms of cancer. Since an abnormal
function of the CDK4-cyclin D1 protein complex can play a pivotal role in causing various …

Drug-likeness and increased hydrophobicity of commercially available compound libraries for drug screening

J Zuegg, MA Cooper - Current topics in medicinal chemistry, 2012 - ingentaconnect.com
Most drug discovery programs today originate by selection of 'hit'molecules resulting from
assays against large compound screening libraries. The chemical space in which these hits …

Identification of 1, 2, 4-Triazine and Its Derivatives Against Lanosterol 14-Demethylase (CYP51) Property of Candida albicans: Influence on the Development of New …

AK Verma, A Majid, MS Hossain, SF Ahmed… - Frontiers in medical …, 2022 - frontiersin.org
This research aims to find out whether the 1, 2, 4-triazine and its derivatives have antifungal
effects and can protect humans from infection with Candida albicans. Molecular docking and …

Impact of surface water layers on protein–ligand binding: how well are experimental data reproduced by molecular dynamics simulations in a thermolysin test case?

M Betz, T Wulsdorf, SG Krimmer… - Journal of Chemical …, 2016 - ACS Publications
Drug binding involves changes of the local water structure around proteins including water
rearrangements across surface-solvation layers around protein and ligand portions exposed …

Multiscale approach to investigate self-assembly of telodendrimer based nanocarriers for anticancer drug delivery

W Jiang, J Luo, S Nangia - Langmuir, 2015 - ACS Publications
Delivery of poorly soluble anticancer drugs can be achieved by employing polymeric drug
delivery systems, capable of forming stable self-assembled nanocarriers with drug …

Enhanced Monte Carlo sampling through replica exchange with solute tempering

DJ Cole, J Tirado-Rives… - Journal of chemical theory …, 2014 - ACS Publications
With a view to improving the consistency of free energy perturbation calculations in Monte
Carlo simulations of protein–ligand complexes, we have implemented the replica exchange …

Solvent structure improves docking prediction in lectin–carbohydrate complexes

DF Gauto, AA Petruk, CP Modenutti, JI Blanco… - …, 2013 - academic.oup.com
Recognition and complex formation between proteins and carbohydrates is a key issue in
many important biological processes. Determination of the three-dimensional structure of …

Blinded predictions of binding modes and energies of HSP90-α ligands for the 2015 D3R grand challenge

ASJS Mey, J Juárez-Jiménez, A Hennessy… - Bioorganic & Medicinal …, 2016 - Elsevier
In the framework of the 2015 D3R inaugural grand challenge, blind binding pose and affinity
predictions were performed for a set of 180 ligands of the Heat Shock Protein HSP90-α …