Jaguar: A high‐performance quantum chemistry software program with strengths in life and materials sciences
AD Bochevarov, E Harder, TF Hughes… - … Journal of Quantum …, 2013 - Wiley Online Library
Jaguar is an ab initio quantum chemical program that specializes in fast electronic structure
predictions for molecular systems of medium and large size. Jaguar focuses on …
predictions for molecular systems of medium and large size. Jaguar focuses on …
Triterpenoid saponins from the genus Camellia: Structures, biological activities, and molecular simulation for structure–activity relationship
This review summarizes the isolation, chemical identification, and biochemical activities of
Camellia triterpenoid saponins, updating a previous review and encompassing all new …
Camellia triterpenoid saponins, updating a previous review and encompassing all new …
Investigation of the newly characterized baimantuoluoamide a and baimantuoluoamide b alkaloids as potential cyclin-dependent kinase 4 (CDK4) inhibitors using …
CDK4 is an enzyme often associated with various forms of cancer. Since an abnormal
function of the CDK4-cyclin D1 protein complex can play a pivotal role in causing various …
function of the CDK4-cyclin D1 protein complex can play a pivotal role in causing various …
Drug-likeness and increased hydrophobicity of commercially available compound libraries for drug screening
Most drug discovery programs today originate by selection of 'hit'molecules resulting from
assays against large compound screening libraries. The chemical space in which these hits …
assays against large compound screening libraries. The chemical space in which these hits …
Identification of 1, 2, 4-Triazine and Its Derivatives Against Lanosterol 14-Demethylase (CYP51) Property of Candida albicans: Influence on the Development of New …
This research aims to find out whether the 1, 2, 4-triazine and its derivatives have antifungal
effects and can protect humans from infection with Candida albicans. Molecular docking and …
effects and can protect humans from infection with Candida albicans. Molecular docking and …
Impact of surface water layers on protein–ligand binding: how well are experimental data reproduced by molecular dynamics simulations in a thermolysin test case?
M Betz, T Wulsdorf, SG Krimmer… - Journal of Chemical …, 2016 - ACS Publications
Drug binding involves changes of the local water structure around proteins including water
rearrangements across surface-solvation layers around protein and ligand portions exposed …
rearrangements across surface-solvation layers around protein and ligand portions exposed …
Multiscale approach to investigate self-assembly of telodendrimer based nanocarriers for anticancer drug delivery
Delivery of poorly soluble anticancer drugs can be achieved by employing polymeric drug
delivery systems, capable of forming stable self-assembled nanocarriers with drug …
delivery systems, capable of forming stable self-assembled nanocarriers with drug …
Enhanced Monte Carlo sampling through replica exchange with solute tempering
DJ Cole, J Tirado-Rives… - Journal of chemical theory …, 2014 - ACS Publications
With a view to improving the consistency of free energy perturbation calculations in Monte
Carlo simulations of protein–ligand complexes, we have implemented the replica exchange …
Carlo simulations of protein–ligand complexes, we have implemented the replica exchange …
Solvent structure improves docking prediction in lectin–carbohydrate complexes
DF Gauto, AA Petruk, CP Modenutti, JI Blanco… - …, 2013 - academic.oup.com
Recognition and complex formation between proteins and carbohydrates is a key issue in
many important biological processes. Determination of the three-dimensional structure of …
many important biological processes. Determination of the three-dimensional structure of …
Blinded predictions of binding modes and energies of HSP90-α ligands for the 2015 D3R grand challenge
In the framework of the 2015 D3R inaugural grand challenge, blind binding pose and affinity
predictions were performed for a set of 180 ligands of the Heat Shock Protein HSP90-α …
predictions were performed for a set of 180 ligands of the Heat Shock Protein HSP90-α …