[HTML][HTML] A decade of advances in transposon-insertion sequencing

AK Cain, L Barquist, AL Goodman, IT Paulsen… - Nature Reviews …, 2020 - nature.com
It has been 10 years since the introduction of modern transposon-insertion sequencing (TIS)
methods, which combine genome-wide transposon mutagenesis with high-throughput …

The physiology and genetics of bacterial responses to antibiotic combinations

R Roemhild, T Bollenbach, DI Andersson - Nature Reviews …, 2022 - nature.com
Several promising strategies based on combining or cycling different antibiotics have been
proposed to increase efficacy and counteract resistance evolution, but we still lack a deep …

[HTML][HTML] Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing

MC Lucas, LP Pryszcz, R Medina, I Milenkovic… - Nature …, 2024 - nature.com
Transfer RNAs (tRNAs) play a central role in protein translation. Studying them has been
difficult in part because a simple method to simultaneously quantify their abundance and …

APOE4 disrupts intracellular lipid homeostasis in human iPSC-derived glia

G Sienski, P Narayan, JM Bonner, N Kory… - Science translational …, 2021 - science.org
The E4 allele of the apolipoprotein E gene (APOE) has been established as a genetic risk
factor for many diseases including cardiovascular diseases and Alzheimer's disease (AD) …

[HTML][HTML] Genetic compensation: A phenomenon in search of mechanisms

MA El-Brolosy, DYR Stainier - PLoS genetics, 2017 - journals.plos.org
Several recent studies in a number of model systems including zebrafish, Arabidopsis, and
mouse have revealed phenotypic differences between knockouts (ie, mutants) and …

A global genetic interaction network maps a wiring diagram of cellular function

M Costanzo, B VanderSluis, EN Koch, A Baryshnikova… - Science, 2016 - science.org
INTRODUCTION Genetic interactions occur when mutations in two or more genes combine
to generate an unexpected phenotype. An extreme negative or synthetic lethal genetic …

[HTML][HTML] Gene essentiality profiling reveals gene networks and synthetic lethal interactions with oncogenic Ras

T Wang, H Yu, NW Hughes, B Liu, A Kendirli, K Klein… - Cell, 2017 - cell.com
The genetic dependencies of human cancers widely vary. Here, we catalog this
heterogeneity and use it to identify functional gene interactions and genotype-dependent …

[HTML][HTML] Functional profiling of a Plasmodium genome reveals an abundance of essential genes

E Bushell, AR Gomes, T Sanderson, B Anar, G Girling… - Cell, 2017 - cell.com
The genomes of malaria parasites contain many genes of unknown function. To assist drug
development through the identification of essential genes and pathways, we have measured …

[HTML][HTML] The ecology and evolution of pangenomes

MA Brockhurst, E Harrison, JPJ Hall, T Richards… - Current Biology, 2019 - cell.com
Since the first genome-scale comparisons, it has been evident that the genomes of many
species are unbound by strict vertical descent: Large differences in gene content can occur …

DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools

H Luo, Y Lin, T Liu, FL Lai, CT Zhang… - Nucleic acids …, 2021 - academic.oup.com
Essential genes refer to genes that are required by an organism to survive under specific
conditions. Studies of the minimal-gene-set for bacteria have elucidated fundamental …