Joint inference of clonal structure using single-cell genome and transcriptome sequencing data

X Bai, Z Duren, L Wan, LC Xia - NAR genomics and …, 2024 - academic.oup.com
Latest advancements in the high-throughput single-cell genome (scDNA) and transcriptome
(scRNA) sequencing technologies enabled cell-resolved investigation of tissue clones …

Single-cell Genome-and-Transcriptome sequencing without upfront whole-genome amplification reveals cell state plasticity of melanoma subclones

K Theunis, S Vanuytven, F Rambow, D Brown… - bioRxiv, 2023 - biorxiv.org
Single-cell multi-omics methods are enabling the study of cell state diversity, which is largely
determined by the interplay of the genome, epigenome, and transcriptome. Here, we …

Учредители: Российская академия наук

АС КАРЯГИНА, ПА ОРЛОВА, АВ ЖУЛИНА… - Биохимия, 2022 - elibrary.ru
На основе предложенного ранее подхода синтезом в клетках Escherichia coli получены
гибридные рекомбинантные белки-потенциальные компоненты эпитопных вакцин …

Novel in-silico predicted matrikines are differential mediators of in vitro and in vivo cellular metabolism

N Jariwala, M Ozols, A Eckersley, B Mambwe… - bioRxiv, 2023 - biorxiv.org
The exogenous application of small peptides can beneficially affect clinical skin appearance
(wrinkles) and architecture (collagen and elastic fibre deposition and epidermal thickness) …

Tumoroscope: a probabilistic model for mapping cancer clones in tumor tissues

SD Shafighi, A Geras, B Jurzysta, AS Naeini, I Filipiuk… - bioRxiv, 2022 - biorxiv.org
Spatial and genomic heterogeneity of tumors is the key for cancer progression, treatment,
and survival. However, a technology for direct mapping the clones in the tumor tissue based …

Canopy2: tumor phylogeny inference by bulk DNA and single-cell RNA sequencing & Blinded and partially-unblinded sample size re-estimation for registry-based …

AMK Weideman - 2024 - cdr.lib.unc.edu
Canopy2: A phylogenetic tree can provide insight into a tumor's composition by tracing the
evolutionary lineage of tumor cells as they acquire mutations. We propose Canopy2, a …

Simultaneous visualization of cells and marker genes from scRNA-seq studies

S Chakraborti, K Gupta, A Mittal, D Sinha… - bioRxiv, 2022 - biorxiv.org
The complexity of scRNA-sequencing datasets highlights the urgent need for enhanced
clustering and visualization methods. Here, we propose Stardust, an iterative, force-directed …

Single-Cell Technologies: Advances in Single-Cell Migration and Multi-Omics

M Moarefian, AMD Capossela, R Eom, K Aran - GEN Biotechnology, 2022 - liebertpub.com
Single-cell responses to different cues are crucial for identifying the mechanisms underlying
biological processes to facilitate disease detection and therapeutic development. The …

Statistical Methods for Single-Cell Omics and Integrative Genomics

R Wang - 2021 - search.proquest.com
Whole genome single-cell DNA sequencing (scDNA-seq) enables characterization of copy
number profiles at the cellular level and holds great promise for deciphering tumor …

[图书][B] Inferring Intra-Tumor Heterogeneity from DNA Sequencing Data

MA Myers - 2022 - search.proquest.com
Cancer is a disease characterized by somatic mutations which accumulate over time and in
response to evolutionary pressures. As a result, tumors are composed of multiple distinct …