Assignment of Homoeologs to Parental Genomes in Allopolyploids for Species Tree Inference, with an Example from Fumaria (Papaveraceae)

YJK Bertrand, AC Scheen, T Marcussen… - Systematic …, 2015 - academic.oup.com
There is a rising awareness that species trees are best inferred from multiple loci while
taking into account processes affecting individual gene trees, such as substitution model …

[HTML][HTML] Adaptive responses drive the success of polyploid yellowcresses (Rorippa, Brassicaceae) in the Hengduan Mountains, a temperate biodiversity hotspot

TS Han, ZY Hu, ZQ Du, QJ Zheng, J Liu, T Mitchell-Olds… - Plant Diversity, 2022 - Elsevier
Polyploids contribute substantially to plant evolution and biodiversity; however, the
mechanisms by which they succeed are still unclear. According to the polyploid adaptation …

Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) – Insights from transcriptome sequences

Y Yu, Q Xiang, PS Manos, DE Soltis, PS Soltis… - PLoS …, 2017 - journals.plos.org
The pattern and rate of genome evolution have profound consequences in organismal
evolution. Whole-genome duplication (WGD), or polyploidy, has been recognized as an …

Notes on the statistical power of the binary state speciation and extinction (BiSSE) model

A Gamisch - Evolutionary Bioinformatics, 2016 - journals.sagepub.com
The Binary State Speciation and Extinction (BiSSE) method is one of the most popular tools
for investigating the rates of diversification and character evolution. Yet, based on previous …

Subgenome dominance and its evolutionary implications in crop domestication and breeding

Z Wang, J Yang, F Cheng, P Li, X Xin… - Horticulture …, 2022 - academic.oup.com
Polyploidization or whole-genome duplication (WGD) is a well-known speciation and
adaptation mechanism in angiosperms, while subgenome dominance is a crucial …

Coevolution in hybrid genomes: nuclear-encoded rubisco small subunits and their plastid-targeting translocons accompanying sequential allopolyploidy events in …

C Li, X Wang, Y Xiao, X Sun, J Wang… - Molecular Biology …, 2020 - academic.oup.com
Abstract The Triticum/Aegilops complex includes hybrid species resulting from homoploid
hybrid speciation and allopolyploid speciation. Sequential allotetra-and allohexaploidy …

Population Genetics of Polyploid Complex Psidium cattleyanum Sabine (Myrtaceae): Preliminary Analyses Based on New Species-Specific Microsatellite Loci and …

RM Machado, FA de Oliveira, F de Matos Alves… - Biochemical …, 2021 - Springer
Polyploidy is a phenomenon that alters the genetic diversity of populations and has been
reported as one of the most important evolutionary forces for plant diversification. The …

Are rates of species diversification and body size evolution coupled in the ferns?

WL Testo, MA Sundue - American Journal of Botany, 2018 - Wiley Online Library
Premise of the Study Understanding the relationship between phenotypic evolution and
lineage diversification is a central goal of evolutionary biology. To extend our understanding …

[HTML][HTML] Polyploid gene expression and regulation in polysomic polyploids

P Van Hieu - American Journal of Plant Sciences, 2019 - scirp.org
Polyploidization is one of the most crucial pathways in introducing speciation and
broadening biodiversity, especially in the Plant Kingdom. Although the majority of studies …

Evolutionary dynamics of genome size in a radiation of woody plants

MK Moeglein, DS Chatelet… - American Journal of …, 2020 - Wiley Online Library
PREMISE Plant genome size ranges widely, providing many opportunities to examine how
genome size variation affects plant form and function. We analyzed trends in chromosome …