Statistical power and significance testing in large-scale genetic studies
PC Sham, SM Purcell - Nature Reviews Genetics, 2014 - nature.com
Significance testing was developed as an objective method for summarizing statistical
evidence for a hypothesis. It has been widely adopted in genetic studies, including genome …
evidence for a hypothesis. It has been widely adopted in genetic studies, including genome …
Genome-wide association studies for common diseases and complex traits
JN Hirschhorn, MJ Daly - Nature reviews genetics, 2005 - nature.com
Genetic factors strongly affect susceptibility to common diseases and also influence disease-
related quantitative traits. Identifying the relevant genes has been difficult, in part because …
related quantitative traits. Identifying the relevant genes has been difficult, in part because …
Fast and efficient QTL mapper for thousands of molecular phenotypes
Motivation: In order to discover quantitative trait loci, multi-dimensional genomic datasets
combining DNA-seq and ChiP-/RNA-seq require methods that rapidly correlate tens of …
combining DNA-seq and ChiP-/RNA-seq require methods that rapidly correlate tens of …
The poolr package for combining independent and dependent p values
O Cinar, W Viechtbauer - Journal of Statistical Software, 2022 - jstatsoft.org
The poolr package provides an implementation of a variety of methods for pooling (ie,
combining) p values, including Fisher's method, Stouffer's method, the inverse chisquare …
combining) p values, including Fisher's method, Stouffer's method, the inverse chisquare …
Defining the consequences of genetic variation on a proteome-wide scale
Genetic variation modulates protein expression through both transcriptional and post-
transcriptional mechanisms. To characterize the consequences of natural genetic diversity …
transcriptional mechanisms. To characterize the consequences of natural genetic diversity …
A tutorial on statistical methods for population association studies
DJ Balding - Nature reviews genetics, 2006 - nature.com
Although genetic association studies have been with us for many years, even for the
simplest analyses there is little consensus on the most appropriate statistical procedures …
simplest analyses there is little consensus on the most appropriate statistical procedures …
High-resolution genetic mapping using the Mouse Diversity outbred population
Abstract The JAX Diversity Outbred population is a new mouse resource derived from
partially inbred Collaborative Cross strains and maintained by randomized outcrossing. As …
partially inbred Collaborative Cross strains and maintained by randomized outcrossing. As …
Estimation of the multiple testing burden for genomewide association studies of nearly all common variants
Genomewide association studies are an exciting strategy in genetics, recently becoming
feasible and harvesting many novel genes linked to multiple phenotypes. Determining the …
feasible and harvesting many novel genes linked to multiple phenotypes. Determining the …
Polymorphisms in FKBP5 are associated with increased recurrence of depressive episodes and rapid response to antidepressant treatment
EB Binder, D Salyakina, P Lichtner, GM Wochnik… - Nature …, 2004 - nature.com
The stress hormone–regulating hypothalamic-pituitary-adrenal (HPA) axis has been
implicated in the causality as well as the treatment of depression. To investigate a possible …
implicated in the causality as well as the treatment of depression. To investigate a possible …
Efficiency and power in genetic association studies
We investigated selection and analysis of tag SNPs for genome-wide association studies by
specifically examining the relationship between investment in genotyping and statistical …
specifically examining the relationship between investment in genotyping and statistical …