Composition and functions of bacterial membrane vesicles

M Toyofuku, S Schild, M Kaparakis-Liaskos… - Nature Reviews …, 2023 - nature.com
Extracellular vesicles are produced by species across all domains of life, suggesting that
vesiculation represents a fundamental principle of living matter. In Gram-negative bacteria …

Furin‐mediated protein processing in infectious diseases and cancer

E Braun, D Sauter - Clinical & translational immunology, 2019 - Wiley Online Library
Proteolytic cleavage regulates numerous processes in health and disease. One key player
is the ubiquitously expressed serine protease furin, which cleaves a plethora of proteins at …

Identification of mobile genetic elements with geNomad

AP Camargo, S Roux, F Schulz, M Babinski, Y Xu… - Nature …, 2023 - nature.com
Identifying and characterizing mobile genetic elements in sequencing data is essential for
understanding their diversity, ecology, biotechnological applications and impact on public …

A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases

MJ Tisza, CB Buck - … of the National Academy of Sciences, 2021 - National Acad Sciences
Despite remarkable strides in microbiome research, the viral component of the microbiome
has generally presented a more challenging target than the bacteriome. This gap persists …

Revisiting the rules of life for viruses of microorganisms

AMS Correa, C Howard-Varona, SR Coy… - Nature Reviews …, 2021 - nature.com
Viruses that infect microbial hosts have traditionally been studied in laboratory settings with
a focus on either obligate lysis or persistent lysogeny. In the environment, these infection …

Standardized bacteriophage purification for personalized phage therapy

T Luong, AC Salabarria, RA Edwards, DR Roach - Nature protocols, 2020 - nature.com
The world is on the cusp of a post-antibiotic era, but researchers and medical doctors have
found a way forward—by looking back at how infections were treated before the advent of …

Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

EPC Rocha, D Bikard - PLoS biology, 2022 - journals.plos.org
Prokaryotes have numerous mobile genetic elements (MGEs) that mediate horizontal gene
transfer (HGT) between cells. These elements can be costly, even deadly, and cells use …

Shiga toxin-associated hemolytic uremic syndrome: A narrative review

A Joseph, A Cointe, P Mariani Kurkdjian, C Rafat… - Toxins, 2020 - mdpi.com
The severity of human infection by one of the many Shiga toxin-producing Escherichia coli
(STEC) is determined by a number of factors: the bacterial genome, the capacity of human …

A new perspective on lysogeny: prophages as active regulatory switches of bacteria

R Feiner, T Argov, L Rabinovich, N Sigal… - Nature Reviews …, 2015 - nature.com
Unlike lytic phages, temperate phages that enter lysogeny maintain a long-term association
with their bacterial host. In this context, mutually beneficial interactions can evolve that …

Genetic and life-history traits associated with the distribution of prophages in bacteria

M Touchon, A Bernheim, EPC Rocha - The ISME journal, 2016 - academic.oup.com
Nearly half of the sequenced bacteria are lysogens and many of their prophages encode
adaptive traits. Yet, the variables driving prophage distribution remain undetermined. We …