Computational tools for exploring sequence databases as a resource for antimicrobial peptides

WF Porto, AS Pires, OL Franco - Biotechnology advances, 2017 - Elsevier
Data mining has been recognized by many researchers as a hot topic in different areas. In
the post-genomic era, the growing number of sequences deposited in databases has been …

Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides

J Xu, F Li, A Leier, D Xiang, HH Shen… - Briefings in …, 2021 - academic.oup.com
Antimicrobial peptides (AMPs) are a unique and diverse group of molecules that play a
crucial role in a myriad of biological processes and cellular functions. AMP-related studies …

Improving recognition of antimicrobial peptides and target selectivity through machine learning and genetic programming

D Veltri, U Kamath, A Shehu - IEEE/ACM transactions on …, 2015 - ieeexplore.ieee.org
Growing bacterial resistance to antibiotics is spurring research on utilizing naturally-
occurring antimicrobial peptides (AMPs) as templates for novel drug design. While …

Effective automated feature construction and selection for classification of biological sequences

U Kamath, K De Jong, A Shehu - PloS one, 2014 - journals.plos.org
Background Many open problems in bioinformatics involve elucidating underlying functional
signals in biological sequences. DNA sequences, in particular, are characterized by rich …

Binary response models for recognition of antimicrobial peptides

EG Randou, D Veltri, A Shehu - Proceedings of the International …, 2013 - dl.acm.org
There is now great urgency in developing new antibiotics to combat bacterial resistance.
Recent attention has turned to naturally-occurring antimicrobial peptides (AMPs) that can …

A computational and statistical framework for screening novel antimicrobial peptides

DP Veltri - 2015 - search.proquest.com
Bacterial resistance to antibiotics continues to be a serious concern worldwide. This has
motivated a strong research focus on naturally-occurring antimicrobial peptides (AMPs) as …

A novel method to improve recognition of antimicrobial peptides through distal sequence-based features

D Veltri, U Kamath, A Shehu - 2014 IEEE International …, 2014 - ieeexplore.ieee.org
Growing bacterial resistance to antibiotics is urging the development of new lines of
treatment. The discovery of naturally-occurring antimicrobial peptides (AMPs) is motivating …

Estimation of the Synergistic Effect of Antimicrobial Peptides and Antibiotics by Machine Learning Models

B Olcay - 2022 - search.proquest.com
Urinary catheters are widely used in patients who cannot empty their bladder. However,
catheter surfaces are suitable for the adhesion of microorganisms, and this causes various …