Dynamics and function of DNA methylation in plants

H Zhang, Z Lang, JK Zhu - Nature reviews Molecular cell biology, 2018 - nature.com
DNA methylation is a conserved epigenetic modification that is important for gene regulation
and genome stability. Aberrant patterns of DNA methylation can lead to plant developmental …

Dynamics of DNA methylation and its functions in plant growth and development

S Kumar, T Mohapatra - Frontiers in Plant Science, 2021 - frontiersin.org
Epigenetic modifications in DNA bases and histone proteins play important roles in the
regulation of gene expression and genome stability. Chemical modification of DNA base …

DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development

L He, H Huang, M Bradai, C Zhao, Y You, J Ma… - Nature …, 2022 - nature.com
A contribution of DNA methylation to defense against invading nucleic acids and
maintenance of genome integrity is uncontested; however, our understanding of the extent …

Widespread natural variation of DNA methylation within angiosperms

CE Niederhuth, AJ Bewick, L Ji, MS Alabady, KD Kim… - Genome biology, 2016 - Springer
Background DNA methylation is an important feature of plant epigenomes, involved in the
formation of heterochromatin and affecting gene expression. Extensive variation of DNA …

Gene body DNA methylation in plants

AJ Bewick, RJ Schmitz - Current opinion in plant biology, 2017 - Elsevier
Highlights•GbM is typified by mCG within coding regions, and depletion at the TSS and
TTS.•Species without gbM revealed an unexpected role for CMT3 in the evolution of …

The Amborella Genome and the Evolution of Flowering Plants

Amborella Genome Project, VA Albert, WB Barbazuk… - Science, 2013 - science.org
Introduction Darwin famously characterized the rapid rise and early diversification of
flowering plants (angiosperms) in the fossil record as an “abominable mystery.” Identifying …

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

IAP Parkin, C Koh, H Tang, SJ Robinson, S Kagale… - Genome biology, 2014 - Springer
Background Brassica oleracea is a valuable vegetable species that has contributed to
human health and nutrition for hundreds of years and comprises multiple distinct cultivar …

[PDF][PDF] Gene body methylation in plants: mechanisms, functions, and important implications for understanding evolutionary processes

AM Muyle, DK Seymour, Y Lv, B Huettel… - Genome biology and …, 2022 - academic.oup.com
Gene body methylation (gbM) is an epigenetic mark where gene exons are methylated in
the CG context only, as opposed to CHG and CHH contexts (where H stands for A, C, or T) …

Plant DNA methylation: an epigenetic mark in development, environmental interactions, and evolution

F Lucibelli, MC Valoroso, S Aceto - International Journal of Molecular …, 2022 - mdpi.com
DNA methylation is an epigenetic modification of the genome involved in the regulation of
gene expression and modulation of chromatin structure. Plant genomes are widely …

Mobile small RNAs regulate genome-wide DNA methylation

MG Lewsey, TJ Hardcastle… - Proceedings of the …, 2016 - National Acad Sciences
RNA silencing at the transcriptional and posttranscriptional levels regulates endogenous
gene expression, controls invading transposable elements (TEs), and protects the cell …