Past and future species definitions for Bacteria and Archaea

R Rosselló-Móra, R Amann - Systematic and applied microbiology, 2015 - Elsevier
Species is the basic unit of biological diversity. However, among the different microbiological
disciplines there is an important degree of disagreement as to what this unit may be. In this …

Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification

RS Gupta - FEMS microbiology reviews, 2016 - academic.oup.com
Analyses of genome sequences, by some approaches, suggest that the widespread
occurrence of horizontal gene transfers (HGTs) in prokaryotes disguises their evolutionary …

Minimal standards for the description of new genera and species of rhizobia and agrobacteria

PM De Lajudie, M Andrews, J Ardley… - … of systematic and …, 2019 - microbiologyresearch.org
Herein the members of the Subcommittee on Taxonomy of Rhizobia and Agrobacteria of the
International Committee on Systematics of Prokaryotes review recent developments in …

High quality genome sequences of thirteen Hypoxylaceae (Ascomycota) strengthen the phylogenetic family backbone and enable the discovery of new taxa

D Wibberg, M Stadler, C Lambert, B Bunk, C Spröer… - Fungal Diversity, 2021 - Springer
Abstract The Hypoxylaceae (Xylariales, Ascomycota) is a diverse family of mainly
saprotrophic fungi, which commonly occur in angiosperm-dominated forests around the …

Genome-informed Bradyrhizobium taxonomy: where to from here?

JR Avontuur, M Palmer, CW Beukes, WY Chan… - Systematic and applied …, 2019 - Elsevier
Bradyrhizobium is thought to be the largest and most diverse rhizobial genus, but this is not
reflected in the number of described species. Although it was one of the first rhizobial genera …

All ANIs are not created equal: implications for prokaryotic species boundaries and integration of ANIs into polyphasic taxonomy

M Palmer, ET Steenkamp, J Blom… - … of Systematic and …, 2020 - microbiologyresearch.org
In prokaryotic taxonomy, a set of criteria is commonly used to delineate species. These
criteria are generally based on cohesion at the phylogenetic, phenotypic and genomic …

Molecular methods as tools to control plant diseases caused by Dickeya and Pectobacterium spp: A minireview

A Motyka, S Zoledowska, W Sledz, E Lojkowska - New biotechnology, 2017 - Elsevier
Dickeya spp. and Pectobacterium spp. are etiological agents of soft rot on crops, vegetables,
and ornamentals. They also cause blackleg on potato. These pectinolytic phytopathogens …

Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. Isolated from Apple Cider Vinegar

L Marič, I Cleenwerck, T Accetto, P Vandamme, J Trček - Microorganisms, 2020 - mdpi.com
Two novel strains AV382 and AV436 were isolated from a submerged industrial bioreactor
for production of apple cider vinegar in Kopivnik (Slovenia). Both strains showed very high …

Development of an Online Genome Sequence Comparison Resource for Bacillus cereus sensu lato Strains Using the Efficient Composition Vector Method

K Wang, C Shu, A Bravo, M Soberón, H Zhang… - Toxins, 2023 - mdpi.com
An automated method was developed for differentiating closely related B. cereus sensu lato
(sl) species, especially biopesticide Bacillus thuringiensis, from other human pathogens, B …

Comparative Genomic Analysis of Virulent Vibrio (Listonella) anguillarum Serotypes Revealed Genetic Diversity and Genomic Signatures in the O-Antigen …

VI Machimbirike, I Vasquez, T Cao… - Microorganisms, 2023 - mdpi.com
Vibrio anguillarum is the most frequent pathogen affecting fish worldwide. The only known
virulent strains of V. anguillarum are serotypes O1, O2, and O3. Genetic differences between …