[HTML][HTML] Single-cell sequencing in stem cell biology

L Wen, F Tang - Genome biology, 2016 - Springer
Cell-to-cell variation and heterogeneity are fundamental and intrinsic characteristics of stem
cell populations, but these differences are masked when bulk cells are used for omic …

Single-cell transcriptional analysis

AR Wu, J Wang, AM Streets… - Annual Review of …, 2017 - annualreviews.org
Despite being a relatively recent technological development, single-cell transcriptional
analysis through high-throughput sequencing has already been used in hundreds of fruitful …

Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia

A Giustacchini, S Thongjuea, N Barkas, PS Woll… - Nature medicine, 2017 - nature.com
Recent advances in single-cell transcriptomics are ideally placed to unravel intratumoral
heterogeneity and selective resistance of cancer stem cell (SC) subpopulations to …

[HTML][HTML] Comparative analysis of droplet-based ultra-high-throughput single-cell RNA-seq systems

X Zhang, T Li, F Liu, Y Chen, J Yao, Z Li, Y Huang… - Molecular cell, 2019 - cell.com
Since its establishment in 2009, single-cell RNA sequencing (RNA-seq) has been a major
driver behind progress in biomedical research. In developmental biology and stem cell …

[HTML][HTML] Single-cell resolution of temporal gene expression during heart development

DM DeLaughter, AG Bick, H Wakimoto, D McKean… - Developmental cell, 2016 - cell.com
Activation of complex molecular programs in specific cell lineages governs mammalian
heart development, from a primordial linear tube to a four-chamber organ. To characterize …

[HTML][HTML] Determining sequencing depth in a single-cell RNA-seq experiment

MJ Zhang, V Ntranos, D Tse - Nature communications, 2020 - nature.com
An underlying question for virtually all single-cell RNA sequencing experiments is how to
allocate the limited sequencing budget: deep sequencing of a few cells or shallow …

Combinatorial labeling of single cells for gene expression cytometry

HC Fan, GK Fu, SPA Fodor - Science, 2015 - science.org
INTRODUCTION The measurement of specific proteins and transcripts in individual cells is
critical for understanding the role of cellular diversity in development, health, and disease …

[HTML][HTML] Optimized design of single-cell RNA sequencing experiments for cell-type-specific eQTL analysis

I Mandric, T Schwarz, A Majumdar, K Hou… - Nature …, 2020 - nature.com
Single-cell RNA-sequencing (scRNA-Seq) is a compelling approach to directly and
simultaneously measure cellular composition and state, which can otherwise only be …

[HTML][HTML] A comparative analysis of library prep approaches for sequencing low input translatome samples

Y Song, B Milon, S Ott, X Zhao, L Sadzewicz, A Shetty… - BMC genomics, 2018 - Springer
Background Cell type-specific ribosome-pulldown has become an increasingly popular
method for analysis of gene expression. It allows for expression analysis from intact tissues …

[HTML][HTML] Single-cell RNA-sequencing of the brain

R Cuevas-Diaz Duran, H Wei, JQ Wu - Clinical and translational medicine, 2017 - Springer
Single-cell RNA-sequencing (scRNA-seq) is revolutionizing our understanding of the
genomic, transcriptomic and epigenomic landscapes of cells within organs. The mammalian …