Gene regulation and transcriptomics

DS Samuels, MC Lybecker, XF Yang, Z Ouyang… - Current issues in …, 2021 - mdpi.com
Borrelia (Borreliella) burgdorferi, along with closely related species, is the etiologic agent of
Lyme disease. The spirochete subsists in an enzootic cycle that encompasses acquisition …

[HTML][HTML] Specific and Global RNA Regulators in Pseudomonas aeruginosa

P Pusic, E Sonnleitner, U Bläsi - International Journal of Molecular …, 2021 - mdpi.com
Pseudomonas aeruginosa (Pae) is an opportunistic pathogen showing a high intrinsic
resistance to a wide variety of antibiotics. It causes nosocomial infections that are particularly …

[HTML][HTML] Do small RNAs unlock the below ground microbiome-plant interaction mystery?

R Regmi, CR Penton, J Anderson… - Frontiers in Molecular …, 2022 - frontiersin.org
Over the past few decades, regulatory RNAs, such as small RNAs (sRNAs), have received
increasing attention in the context of host-microbe interactions due to their diverse roles in …

[HTML][HTML] Plant biomarkers as early detection tools in stress management in food crops: a review

O Aina, OO Bakare, AO Fadaka, M Keyster, A Klein - Planta, 2024 - Springer
Abstract Main conclusion Plant Biomarkers are objective indicators of a plant's cellular state
in response to abiotic and biotic stress factors. They can be explored in crop breeding and …

BIC: a database for the transcriptional landscape of bacteria in cancer

KP Chen, CL Hsu, YJ Oyang, HC Huang… - Nucleic acids …, 2023 - academic.oup.com
Microbial communities are massively resident in the human body, yet dysbiosis has been
reported to correlate with many diseases, including various cancers. Most studies focus on …

Agnodice: indexing experimentally supported bacterial sRNA-RNA interactions

V Kotsira, G Skoufos, A Alexiou, M Zioga, S Tastsoglou… - Mbio, 2024 - Am Soc Microbiol
In the last decade, the immense growth in the field of bacterial small RNAs (sRNAs), along
with the biotechnological breakthroughs in Deep Sequencing permitted the deeper …

[HTML][HTML] RNA regulated toxin-antitoxin systems in pathogenic bacteria

DD Sarpong, ER Murphy - Frontiers in Cellular and Infection …, 2021 - frontiersin.org
The dynamic host environment presents a significant hurdle that pathogenic bacteria must
overcome to survive and cause diseases. Consequently, these organisms have evolved …

sRNA23, a novel small RNA, regulates to the pathogenesis of Streptococcus suis serotype 2

Q Xu, H Chen, W Sun, Y Zhang, D Zhu, KR Rai… - Virulence, 2021 - Taylor & Francis
Streptococcus suis serotype 2 (S. suis 2) is an important ubiquitous zoonotic pathogen. To
date, regulatory factors and their implication in S. suis pathogenesis are not fully understood …

Multifaceted Interplay between Hfq and the Small RNA GssA in Pseudomonas aeruginosa

S Santoro, C Paganin, S Gilardi, T Brignoli, G Bertoni… - Mbio, 2023 - Am Soc Microbiol
Behind the pathogenic lifestyle of Pseudomonas aeruginosa exists a complex regulatory
network of intertwined switches at both the transcriptional and posttranscriptional levels …

The small RNA RsaF regulates the expression of secreted virulence factors in Staphylococcus aureus Newman

N Patel, M Nair - Journal of Microbiology, 2021 - Springer
The pathogenesis of Staphylococcus aureus, from local infections to systemic dissemination,
is mediated by a battery of virulence factors that are regulated by intricate mechanisms …